The revised classification of eukaryotes

SM Adl, AGB Simpson, CE Lane… - Journal of eukaryotic …, 2012‏ - Wiley Online Library
This revision of the classification of eukaryotes, which updates that of Adl et al.[J. Eukaryot.
Microbiol. 52 (2005) 399], retains an emphasis on the protists and incorporates changes …

Babesia: a world emerging

L Schnittger, AE Rodriguez… - Infection, Genetics and …, 2012‏ - Elsevier
Babesia are tick-transmitted hemoprotozooans that infect mammals and birds, and which
are acknowledged for their major impact on farm and pet animal health and associated …

[HTML][HTML] Fusarium: more than a node or a foot-shaped basal cell

PW Crous, L Lombard, M Sandoval-Denis, KA Seifert… - Studies in mycology, 2021‏ - Elsevier
Recent publications have argued that there are potentially serious consequences for
researchers in recognising distinct genera in the terminal fusarioid clade of the family …

Complexity of avian evolution revealed by family-level genomes

J Stiller, S Feng, AA Chowdhury, I Rivas-González… - Nature, 2024‏ - nature.com
Despite tremendous efforts in the past decades, relationships among main avian lineages
remain heavily debated without a clear resolution. Discrepancies have been attributed to …

Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 …

Y Zheng, JJ Wiens - Molecular phylogenetics and evolution, 2016‏ - Elsevier
Two common approaches for estimating phylogenies in species-rich groups are to:(i)
sample many loci for few species (eg phylogenomic approach), or (ii) sample many species …

A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes

RA Pyron, FT Burbrink, JJ Wiens - BMC evolutionary biology, 2013‏ - Springer
Background The extant squamates (> 9400 known species of lizards and snakes) are one of
the most diverse and conspicuous radiations of terrestrial vertebrates, but no studies have …

Why do phylogenomic data sets yield conflicting trees? Data type influences the avian tree of life more than taxon sampling

S Reddy, RT Kimball, A Pandey, PA Hosner… - Systematic …, 2017‏ - academic.oup.com
Phylogenomics, the use of large-scale data matrices in phylogenetic analyses, has been
viewed as the ultimate solution to the problem of resolving difficult nodes in the tree of life …

Ctenophore relationships and their placement as the sister group to all other animals

NV Whelan, KM Kocot, TP Moroz, K Mukherjee… - Nature ecology & …, 2017‏ - nature.com
Ctenophora, comprising approximately 200 described species, is an important lineage for
understanding metazoan evolution and is of great ecological and economic importance …

Anchored hybrid enrichment for massively high-throughput phylogenomics

AR Lemmon, SA Emme, EM Lemmon - Systematic biology, 2012‏ - academic.oup.com
The field of phylogenetics is on the cusp of a major revolution, enabled by new methods of
data collection that leverage both genomic resources and recent advances in DNA …

Resolving difficult phylogenetic questions: why more sequences are not enough

H Philippe, H Brinkmann, DV Lavrov… - PLoS …, 2011‏ - journals.plos.org
In the quest to reconstruct the Tree of Life, researchers have increasingly turned to
phylogenomics, the inference of phylogenetic relationships using genome-scale data (Box …