Modelling cosmic radiation events in the tree-ring radiocarbon record

Q Zhang, U Sharma, JA Dennis… - … of the Royal …, 2022 - royalsocietypublishing.org
Annually resolved measurements of the radiocarbon content in tree-rings have revealed
rare sharp rises in carbon-14 production. These 'Miyake events' are likely produced by rare …

Impact of Commission on Cancer Accreditation on Cancer Survival: A Surveillance, Epidemiology, and End Results (SEER) Database Analysis

A Ahmed, J Whittington, Z Shafaee - Annals of Surgical Oncology, 2024 - Springer
Introduction To analyze the cancer burden in the United States, researchers are relying on
the Surveillance, Epidemiology, and End Results (SEER) Program. Our objective was to …

Chromosome-level genome assembly of Tritrichomonas foetus, the causative agent of Bovine Trichomonosis

MY Abdel-Glil, J Solle, D Wibberg, H Neubauer… - Scientific Data, 2024 - nature.com
Tritrichomonas foetus is a parasitic protist responsible for bovine trichomonosis, a
reproductive disease associated with significant economic burden to the livestock industry …

Facilitating integrative and personalized oncology omics analysis with UCSCXenaShiny

S Li, Y Peng, M Chen, Y Zhao, Y **ong, J Li… - Communications …, 2024 - nature.com
The continuous generation of multi-omics and phenotype data is propelling advancements
in precision oncology. UCSCXenaShiny was developed as an interactive tool for exploring …

[HTML][HTML] A GDPR-compliant solution for analysis of large-scale genomics datasets on HPC cloud infrastructure

S Gioiosa, B Chiavarini… - … of Big Data, 2025 - journalofbigdata.springeropen.com
This paper outlines the technical and organizational measures implemented by the Italian
supercomputing center, CINECA, to efficiently collect, process, and store sensitive-omics …

Zebrafish models of Mucopolysaccharidosis types IIIA, B, & C show hyperactivity and changes in oligodendrocyte state

E Gerken, S Ahmad, L Rattan, K Hemsley, S Suo… - bioRxiv, 2023 - biorxiv.org
Sanfilippo syndrome childhood dementia, also known as mucopolysaccharidosis type III
(MPS III), is a rare inherited lysosomal storage disorder. Subtypes of MPS III are caused by …

[HTML][HTML] Advancing genomic epidemiology by addressing the bioinformatics bottleneck: Challenges, design principles, and a Swiss example

C Chen, S Nadeau, I Topolsky, N Beerenwinkel… - Epidemics, 2022 - Elsevier
The SARS-CoV-2 pandemic led to a huge increase in global pathogen genome sequencing
efforts, and the resulting data are becoming increasingly important to detect variants of …

Sensitive inference of alignment-safe intervals from biodiverse protein sequence clusters using EMERALD

A Grigorjew, A Gynter, FHC Dias, B Buchfink, HG Drost… - Genome Biology, 2023 - Springer
 Abstract Sequence alignments are the foundations of life science research, but most
innovation so far focuses on optimal alignments, while information derived from suboptimal …

Monophyly and transoceanic dispersal in the widespread floating club-rush clade, Isolepis subgenus Fluitantes (Cyperaceae)

JA Viljoen, TAJ Hedderson, CS Bjorå… - Plant Ecology and …, 2022 - JSTOR
Background and aims–Numerous lineages in the Western Cape of South Africa show
affinities with the floras of tropical Africa and Australasia. Isolepis subgenus Fluitantes …