[HTML][HTML] The language of proteins: NLP, machine learning & protein sequences

D Ofer, N Brandes, M Linial - Computational and Structural Biotechnology …, 2021 - Elsevier
Natural language processing (NLP) is a field of computer science concerned with automated
text and language analysis. In recent years, following a series of breakthroughs in deep and …

Natural product drug discovery in the artificial intelligence era

FI Saldívar-González, VD Aldas-Bulos… - Chemical …, 2022 - pubs.rsc.org
Natural products (NPs) are primarily recognized as privileged structures to interact with
protein drug targets. Their unique characteristics and structural diversity continue to marvel …

Information retrieval and text mining technologies for chemistry

M Krallinger, O Rabal, A Lourenco, J Oyarzabal… - Chemical …, 2017 - ACS Publications
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

Network medicine in the age of biomedical big data

AR Sonawane, ST Weiss, K Glass, A Sharma - Frontiers in Genetics, 2019 - frontiersin.org
Network medicine is an emerging area of research dealing with molecular and genetic
interactions, network biomarkers of disease, and therapeutic target discovery. Large-scale …

A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts

D Westergaard, HH Stærfeldt, C Tønsberg… - PLoS computational …, 2018 - journals.plos.org
Across academia and industry, text mining has become a popular strategy for kee** up
with the rapid growth of the scientific literature. Text mining of the scientific literature has …

The ocean sampling day consortium

A Kopf, M Bicak, R Kottmann, J Schnetzer, I Kostadinov… - Gigascience, 2015 - Springer
Abstract Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …

Protein sequence classification through deep learning and encoding strategies

F Tasnim, SU Habiba, T Mahmud, L Nahar… - Procedia Computer …, 2024 - Elsevier
Protein sequence classification is vital for understanding protein functionalities, aiding in the
inference of novel protein functions. Machine learning and deep learning algorithms have …

Past and future uses of text mining in ecology and evolution

MJ Farrell, L Brierley, A Willoughby… - Proceedings of the …, 2022 - royalsocietypublishing.org
Ecology and evolutionary biology, like other scientific fields, are experiencing an
exponential growth of academic manuscripts. As domain knowledge accumulates, scientists …

Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future

GA Pavlopoulos, D Malliarakis, N Papanikolaou… - …, 2015 - academic.oup.com
Abstract “Α picture is worth a thousand words.” This widely used adage sums up in a few
words the notion that a successful visual representation of a concept should enable easy …

Exploring protein-protein interactions at the proteome level

H Elhabashy, F Merino, V Alva, O Kohlbacher… - Structure, 2022 - cell.com
Proteins are central to all of the processes of life. For their activity, they almost invariably
need to interact with other macromolecules, be they nucleic acids, membranes, glycans, or …