Application of deep learning methods in biological networks

S **, X Zeng, F **a, W Huang, X Liu - Briefings in bioinformatics, 2021 - academic.oup.com
The increase in biological data and the formation of various biomolecule interaction
databases enable us to obtain diverse biological networks. These biological networks …

Endless forms most beautiful 2.0: teleonomy and the bioengineering of chimaeric and synthetic organisms

WP Clawson, M Levin - Biological Journal of the Linnean …, 2023 - academic.oup.com
The rich variety of biological forms and behaviours results from one evolutionary history on
Earth, via frozen accidents and selection in specific environments. This ubiquitous baggage …

[LIVRO][B] Entangled life: How fungi make our worlds, change our minds & shape our futures

M Sheldrake - 2021 - books.google.com
NEW YORK TIMES BESTSELLER• A “brilliant [and] entrancing”(The Guardian) journey into
the hidden lives of fungi—the great connectors of the living world—and their astonishing and …

Deep learning for imaging and detection of microorganisms

Y Zhang, H Jiang, T Ye, M Juhas - Trends in Microbiology, 2021 - cell.com
Despite tremendous recent interest, the application of deep learning in microbiology has still
not reached its full potential. To tackle the challenges faced by human-operated microscopy …

Mechanisms Underlying Ophiocordyceps Infection and Behavioral Manipulation of Ants: Unique or Ubiquitous?

E van Roosmalen, C de Bekker - Annual Review of Microbiology, 2024 - annualreviews.org
Parasite manipulation of host behavior, as an effective strategy to establish transmission,
has evolved multiple times across taxa, including fungi. Major strides have been made to …

Data-driven deep supervision for medical image segmentation

S Mishra, Y Zhang, DZ Chen… - IEEE Transactions on …, 2022 - ieeexplore.ieee.org
Medical image segmentation plays a vital role in disease diagnosis and analysis. However,
data-dependent difficulties such as low image contrast, noisy background, and complicated …

The evolutionary ecology of circadian rhythms in infection

ML Westwood, AJ O'Donnell, C de Bekker… - Nature ecology & …, 2019 - nature.com
Biological rhythms coordinate organisms' activities with daily rhythms in the environment.
For parasites, this includes rhythms in both the external abiotic environment and the within …

Deep learning-based selection of human sperm with high DNA integrity

C McCallum, J Riordon, Y Wang, T Kong… - Communications …, 2019 - nature.com
Despite the importance of sperm DNA to human reproduction, currently no method exists to
assess individual sperm DNA quality prior to clinical selection. Traditionally, skilled …

Concerns, challenges and promises of high-content analysis of 3D cellular models

N Carragher, F Piccinini, A Tesei, OJT Jr… - Nature reviews Drug …, 2018 - nature.com
© 2018 Mac millan Publishers Li mited, part of Springer Nature. All rights reserved. deeper
penetration of light into tissue, but many areas require improvement, especially if 3D …

[HTML][HTML] Seeking the Psilocybiome: Psychedelics meet the microbiota-gut-brain axis

JR Kelly, G Clarke, A Harkin, SC Corr, S Galvin… - International Journal of …, 2023 - Elsevier
Moving towards a systems psychiatry paradigm embraces the inherent complex interactions
across all levels from micro to macro and necessitates an integrated approach to treatment …