[HTML][HTML] Quantitative FRET studies and integrative modeling unravel the structure and dynamics of biomolecular systems

M Dimura, TO Peulen, CA Hanke, A Prakash… - Current opinion in …, 2016 - Elsevier
Highlights•Hybrid-FRET on rails automates FRET-based integrative structural
modeling.•Automated experiment design assures highest structural quality with minimal …

FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices

E Lerner, A Barth, J Hendrix, B Ambrose, V Birkedal… - Elife, 2021 - elifesciences.org
Single-molecule FRET (smFRET) has become a mainstream technique for studying
biomolecular structural dynamics. The rapid and wide adoption of smFRET experiments by …

Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins

G Agam, C Gebhardt, M Popara, R Mächtel, J Folz… - Nature …, 2023 - nature.com
Single-molecule Förster-resonance energy transfer (smFRET) experiments allow the study
of biomolecular structure and dynamics in vitro and in vivo. We performed an international …

Structural origin of slow diffusion in protein folding

HS Chung, S Piana-Agostinetti, DE Shaw, WA Eaton - Science, 2015 - science.org
Experimental, theoretical, and computational studies of small proteins suggest that
interresidue contacts not present in the folded structure play little or no role in the self …

Single-molecule imaging of non-equilibrium molecular ensembles on the millisecond timescale

MF Juette, DS Terry, MR Wasserman, RB Altman… - Nature …, 2016 - nature.com
Single-molecule fluorescence microscopy is uniquely suited for detecting transient
molecular recognition events, yet achieving the time resolution and statistics needed to …

Protein folding transition path times from single molecule FRET

HS Chung, WA Eaton - Current opinion in structural biology, 2018 - Elsevier
Highlights•Single molecule FRET experiments determine average transition path
times.•Observed times are extremely close to those found in all-atom MD simulations.•Times …

Highly disordered amyloid-β monomer probed by single-molecule FRET and MD simulation

F Meng, MMJ Bellaiche, JY Kim, GH Zerze, RB Best… - Biophysical journal, 2018 - cell.com
Monomers of amyloid-β (Aβ) protein are known to be disordered, but there is considerable
controversy over the existence of residual or transient conformations that can potentially …

[HTML][HTML] Unraveling multi-state molecular dynamics in single-molecule FRET experiments. I. Theory of FRET-lines

A Barth, O Opanasyuk, TO Peulen… - The Journal of …, 2022 - pubs.aip.org
Conformational dynamics of biomolecules are of fundamental importance for their function.
Single-molecule studies of Förster Resonance Energy Transfer (smFRET) between a …

Unraveling the thousand word picture: an introduction to super-resolution data analysis

A Lee, K Tsekouras, C Calderon, C Bustamante… - Chemical …, 2017 - ACS Publications
Super-resolution microscopy provides direct insight into fundamental biological processes
occurring at length scales smaller than light's diffraction limit. The analysis of data at such …

Modern kinetics and mechanism of protein folding: A retrospective

WA Eaton - The Journal of Physical Chemistry B, 2021 - ACS Publications
Modern experimental kinetics of protein folding began in the early 1990s with the
introduction of nanosecond laser pulses to trigger the folding reaction, providing an almost …