Literature mining for the biologist: from information retrieval to biological discovery
For the average biologist, hands-on literature mining currently means a keyword search in
PubMed. However, methods for extracting biomedical facts from the scientific literature have …
PubMed. However, methods for extracting biomedical facts from the scientific literature have …
Mining the biomedical literature in the genomic era: an overview
The past decade has seen a tremendous growth in the amount of experimental and
computational biomedical data, specifically in the areas of genomics and proteomics. This …
computational biomedical data, specifically in the areas of genomics and proteomics. This …
Semeval-2010 task 8: Multi-way classification of semantic relations between pairs of nominals
In response to the continuing research interest in computational semantic analysis, we have
proposed a new task for SemEval-2010: multi-way classification of mutually exclusive …
proposed a new task for SemEval-2010: multi-way classification of mutually exclusive …
[PDF][PDF] Semeval-2012 task 2: Measuring degrees of relational similarity
Up to now, work on semantic relations has focused on relation classification: recognizing
whether a given instance (a word pair such as virus: flu) belongs to a specific relation class …
whether a given instance (a word pair such as virus: flu) belongs to a specific relation class …
Text mining: generating hypotheses from MEDLINE
P Srinivasan - Journal of the American Society for Information …, 2004 - Wiley Online Library
Hypothesis generation, a crucial initial step for making scientific discoveries, relies on prior
knowledge, experience, and intuition. Chance connections made between seemingly …
knowledge, experience, and intuition. Chance connections made between seemingly …
A method for finding communities of related genes
DM Wilkinson, BA Huberman - proceedings of the national …, 2004 - National Acad Sciences
We present a method for creating a network of gene co-occurrences from the literature and
partitioning it into communities of related genes. The way in which our method identifies …
partitioning it into communities of related genes. The way in which our method identifies …
Using literature-based discovery to identify disease candidate genes
We present BITOLA, an interactive literature-based biomedical discovery support system.
The goal of this system is to discover new, potentially meaningful relations between a given …
The goal of this system is to discover new, potentially meaningful relations between a given …
[HTML][HTML] GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data
The immense growth in the volume of research literature and experimental data in the field
of molecular biology calls for efficient automatic methods to capture and store information. In …
of molecular biology calls for efficient automatic methods to capture and store information. In …
Extracting human protein interactions from MEDLINE using a full-sentence parser
N Daraselia, A Yuryev, S Egorov, S Novichkova… - …, 2004 - academic.oup.com
Motivation: The living cell is a complex machine that depends on the proper functioning of its
numerous parts, including proteins. Understanding protein functions and how they modify …
numerous parts, including proteins. Understanding protein functions and how they modify …
[PDF][PDF] Semeval-2007 task 04: Classification of semantic relations between nominals
The NLP community has shown a renewed interest in deeper semantic analyses, among
them automatic recognition of relations between pairs of words in a text. We present an …
them automatic recognition of relations between pairs of words in a text. We present an …