A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny: The Legume Phylogeny Working Group (LPWG)

N Azani, M Babineau, CD Bailey, H Banks, AR Barbosa… - taxon, 2017 - Wiley Online Library
The classification of the legume family proposed here addresses the long‐known non‐
monophyly of the traditionally recognised subfamily Caesalpinioideae, by recognising six …

Large‐scale genomic sequence data resolve the deepest divergences in the legume phylogeny and support a near‐simultaneous evolutionary origin of all six …

EJM Koenen, DI Ojeda, R Steeves, J Migliore… - New …, 2020 - Wiley Online Library
Phylogenomics is increasingly used to infer deep‐branching relationships while revealing
the complexity of evolutionary processes such as incomplete lineage sorting, hybridization …

Precipitation is the main axis of tropical plant phylogenetic turnover across space and time

JJ Ringelberg, EJM Koenen, B Sauter, A Aebli… - Science …, 2023 - science.org
Early natural historians—Comte de Buffon, von Humboldt, and De Candolle—established
environment and geography as two principal axes determining the distribution of groups of …

The origin of the legumes is a complex paleopolyploid phylogenomic tangle closely associated with the Cretaceous–Paleogene (K–Pg) mass extinction event

EJM Koenen, DI Ojeda, FT Bakker… - Systematic …, 2021 - academic.oup.com
The consequences of the Cretaceous–Paleogene (K–Pg) boundary (KPB) mass extinction
for the evolution of plant diversity remain poorly understood, even though evolutionary …

The chloroplast genome evolution of Venus slipper (Paphiopedilum): IR expansion, SSC contraction, and highly rearranged SSC regions

YY Guo, JX Yang, MZ Bai, GQ Zhang, ZJ Liu - BMC Plant Biology, 2021 - Springer
Background Paphiopedilum is the largest genus of slipper orchids. Previous studies showed
that the phylogenetic relationships of this genus are not well resolved, and sparse taxon …

Hybrid capture of 964 nuclear genes resolves evolutionary relationships in the mimosoid legumes and reveals the polytomous origins of a large pantropical radiation

EJM Koenen, C Kidner, ÉR de Souza… - American Journal of …, 2020 - Wiley Online Library
PREMISE Targeted enrichment methods facilitate sequencing of hundreds of nuclear loci to
enhance phylogenetic resolution and elucidate why some parts of the “tree of life” are …

Extensive genomic rearrangements mediated by repetitive sequences in plastomes of Medicago and its relatives

S Wu, J Chen, Y Li, A Liu, A Li, M Yin, N Shrestha… - BMC Plant …, 2021 - Springer
Background Although plastomes are highly conserved with respect to gene content and
order in most photosynthetic angiosperms, extensive genomic rearrangements have been …

Lost and found: return of the inverted repeat in the legume clade defined by its absence

IS Choi, R Jansen, T Ruhlman - Genome biology and evolution, 2019 - academic.oup.com
The plant genome comprises a coevolving, integrated genetic system housed in three
subcellular compartments: the nucleus, mitochondrion, and the plastid. The typical land …

Chloroplast genomes of four Carex species: Long repetitive sequences trigger dramatic changes in chloroplast genome structure

S Xu, K Teng, H Zhang, K Gao, J Wu, L Duan… - Frontiers in Plant …, 2023 - frontiersin.org
The chloroplast genomes of angiosperms usually have a stable circular quadripartite
structure that exhibits high consistency in genome size and gene order. As one of the most …

[HTML][HTML]  Advances in Legume Systematics 14. Classification of Caesalpinioideae. Part 2: Higher-level classification

A Bruneau, LP de Queiroz, JJ Ringelberg… - …, 2024 - pmc.ncbi.nlm.nih.gov
 Abstract Caesalpinioideae is the second largest subfamily of legumes (Leguminosae) with
ca. 4680 species and 163 genera. It is an ecologically and economically important group …