Predicting protein–protein interactions from the molecular to the proteome level
Identification of protein–protein interactions (PPIs) is at the center of molecular biology
considering the unquestionable role of proteins in cells. Combinatorial interactions result in …
considering the unquestionable role of proteins in cells. Combinatorial interactions result in …
Hot spots in protein–protein interfaces: Towards drug discovery
Identification of drug-like small molecules that alter protein–protein interactions might be a
key step in drug discovery. However, it is very challenging to find such molecules that target …
key step in drug discovery. However, it is very challenging to find such molecules that target …
Pharmacological inactivation of Skp2 SCF ubiquitin ligase restricts cancer stem cell traits and cancer progression
Skp2 E3 ligase is overexpressed in numerous human cancers and plays a critical role in cell-
cycle progression, senescence, metabolism, cancer progression, and metastasis. In the …
cycle progression, senescence, metabolism, cancer progression, and metastasis. In the …
Structural and functional analysis of a plant resistance protein TIR domain reveals interfaces for self-association, signaling, and autoregulation
Summary The Toll/interleukin-1 receptor (TIR) domain occurs in animal and plant immune
receptors. In the animal Toll-like receptors, homodimerization of the intracellular TIR domain …
receptors. In the animal Toll-like receptors, homodimerization of the intracellular TIR domain …
BeAtMuSiC: prediction of changes in protein–protein binding affinity on mutations
The ability of proteins to establish highly selective interactions with a variety of (macro)
molecular partners is a crucial prerequisite to the realization of their biological functions. The …
molecular partners is a crucial prerequisite to the realization of their biological functions. The …
Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM
Prediction of protein-protein interactions at the structural level on the proteome scale is
important because it allows prediction of protein function, helps drug discovery and takes …
important because it allows prediction of protein function, helps drug discovery and takes …
[HTML][HTML] GTP-dependent K-Ras dimerization
S Muratcioglu, TS Chavan, BC Freed, H Jang… - Structure, 2015 - cell.com
Ras proteins recruit and activate effectors, including Raf, that transmit receptor-initiated
signals. Monomeric Ras can bind Raf; however, activation of Raf requires its dimerization. It …
signals. Monomeric Ras can bind Raf; however, activation of Raf requires its dimerization. It …
KFC2: a knowledge‐based hot spot prediction method based on interface solvation, atomic density, and plasticity features
X Zhu, JC Mitchell - Proteins: Structure, Function, and …, 2011 - Wiley Online Library
Hot spots constitute a small fraction of protein–protein interface residues, yet they account
for a large fraction of the binding affinity. Based on our previous method (KFC), we present …
for a large fraction of the binding affinity. Based on our previous method (KFC), we present …
Predicting and experimentally validating hot-spot residues at protein–protein interfaces
Protein–protein interactions (PPIs) are vital to all biological processes. These interactions
are often dynamic, sometimes transient, typically occur over large topographically shallow …
are often dynamic, sometimes transient, typically occur over large topographically shallow …
In silico Approaches for the Design and Optimization of Interfering Peptides Against Protein–Protein Interactions
Large contact surfaces of protein–protein interactions (PPIs) remain to be an ongoing issue
in the discovery and design of small molecule modulators. Peptides are intrinsically capable …
in the discovery and design of small molecule modulators. Peptides are intrinsically capable …