Integrating QSAR modelling and deep learning in drug discovery: the emergence of deep QSAR

A Tropsha, O Isayev, A Varnek, G Schneider… - Nature Reviews Drug …, 2024 - nature.com
Quantitative structure–activity relationship (QSAR) modelling, an approach that was
introduced 60 years ago, is widely used in computer-aided drug design. In recent years …

Machine learning in preclinical drug discovery

DB Catacutan, J Alexander, A Arnold… - Nature Chemical …, 2024 - nature.com
Drug-discovery and drug-development endeavors are laborious, costly and time consuming.
These programs can take upward of 12 years and cost US $2.5 billion, with a failure rate of …

Prospective de novo drug design with deep interactome learning

K Atz, L Cotos, C Isert, M Håkansson, D Focht… - Nature …, 2024 - nature.com
De novo drug design aims to generate molecules from scratch that possess specific
chemical and pharmacological properties. We present a computational approach utilizing …

Invalid SMILES are beneficial rather than detrimental to chemical language models

MA Skinnider - Nature Machine Intelligence, 2024 - nature.com
Generative machine learning models have attracted intense interest for their ability to
sample novel molecules with desired chemical or biological properties. Among these …

Unlocking the potential of generative AI in drug discovery

A Gangwal, A Lavecchia - Drug Discovery Today, 2024 - Elsevier
Highlights•Artificial intelligence (AI) is transforming the drug discovery process by providing
actionable insights from huge amount of data.•Deep-learning models, especially generative …

Artificial intelligence for natural product drug discovery

MW Mullowney, KR Duncan, SS Elsayed… - Nature Reviews Drug …, 2023 - nature.com
Developments in computational omics technologies have provided new means to access
the hidden diversity of natural products, unearthing new potential for drug discovery. In …

Language models can learn complex molecular distributions

D Flam-Shepherd, K Zhu, A Aspuru-Guzik - Nature Communications, 2022 - nature.com
Deep generative models of molecules have grown immensely in popularity, trained on
relevant datasets, these models are used to search through chemical space. The …

[HTML][HTML] Chemical language models for de novo drug design: Challenges and opportunities

F Grisoni - Current Opinion in Structural Biology, 2023 - Elsevier
Generative deep learning is accelerating de novo drug design, by allowing the generation of
molecules with desired properties on demand. Chemical language models–which generate …

Chemical language modeling with structured state space sequence models

R Özçelik, S de Ruiter, E Criscuolo, F Grisoni - Nature Communications, 2024 - nature.com
Generative deep learning is resha** drug design. Chemical language models (CLMs)–
which generate molecules in the form of molecular strings–bear particular promise for this …

Evaluation guidelines for machine learning tools in the chemical sciences

A Bender, N Schneider, M Segler… - Nature Reviews …, 2022 - nature.com
Abstract Machine learning (ML) promises to tackle the grand challenges in chemistry and
speed up the generation, improvement and/or ordering of research hypotheses. Despite the …