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Antibiotic resistance in Pseudomonas aeruginosa–Mechanisms, epidemiology and evolution
Antibiotics are powerful drugs used in the treatment of bacterial infections. The inappropriate
use of these medicines has driven the dissemination of antibiotic resistance (AR) in most …
use of these medicines has driven the dissemination of antibiotic resistance (AR) in most …
Epistasis and adaptation on fitness landscapes
C Bank - Annual Review of Ecology, Evolution, and Systematics, 2022 - annualreviews.org
Epistasis occurs when the effect of a mutation depends on its carrier's genetic background.
Despite increasing evidence that epistasis for fitness is common, its role during evolution is …
Despite increasing evidence that epistasis for fitness is common, its role during evolution is …
Drivers and impacts of the most extreme marine heatwave events
Prolonged high-temperature extreme events in the ocean, marine heatwaves, can have
severe and long-lasting impacts on marine ecosystems, fisheries and associated services …
severe and long-lasting impacts on marine ecosystems, fisheries and associated services …
Low-N protein engineering with data-efficient deep learning
Protein engineering has enormous academic and industrial potential. However, it is limited
by the lack of experimental assays that are consistent with the design goal and sufficiently …
by the lack of experimental assays that are consistent with the design goal and sufficiently …
Empirical fitness landscapes and the predictability of evolution
The genotype–fitness map (that is, the fitness landscape) is a key determinant of evolution,
yet it has mostly been used as a superficial metaphor because we know little about its …
yet it has mostly been used as a superficial metaphor because we know little about its …
Evolutionary mechanisms sha** the maintenance of antibiotic resistance
Antibiotics target essential cellular functions but bacteria can become resistant by acquiring
either exogenous resistance genes or chromosomal mutations. Resistance mutations …
either exogenous resistance genes or chromosomal mutations. Resistance mutations …
Epistasis between antibiotic tolerance, persistence, and resistance mutations
Understanding the evolution of microorganisms under antibiotic treatments is a burning
issue. Typically, several resistance mutations can accumulate under antibiotic treatment …
issue. Typically, several resistance mutations can accumulate under antibiotic treatment …
Experimental design, population dynamics, and diversity in microbial experimental evolution
In experimental evolution, laboratory-controlled conditions select for the adaptation of
species, which can be monitored in real time. Despite the current popularity of such …
species, which can be monitored in real time. Despite the current popularity of such …
Causes of molecular convergence and parallelism in protein evolution
JF Storz - Nature Reviews Genetics, 2016 - nature.com
To what extent is the convergent evolution of protein function attributable to convergent or
parallel changes at the amino acid level? The mutations that contribute to adaptive protein …
parallel changes at the amino acid level? The mutations that contribute to adaptive protein …
Learning from protein engineering by deconvolution of multi‐mutational variants
This review analyzes a development in biochemistry, enzymology and biotechnology that
originally came as a surprise. Following the establishment of directed evolution of …
originally came as a surprise. Following the establishment of directed evolution of …