The second wave of synthetic biology: from modules to systems
PEM Purnick, R Weiss - Nature reviews Molecular cell biology, 2009 - nature.com
Synthetic biology is a research field that combines the investigative nature of biology with
the constructive nature of engineering. Efforts in synthetic biology have largely focused on …
the constructive nature of engineering. Efforts in synthetic biology have largely focused on …
Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels
The ability to generate microorganisms that can produce biofuels similar to petroleum-based
transportation fuels would allow the use of existing engines and infrastructure and would …
transportation fuels would allow the use of existing engines and infrastructure and would …
[BOOK][B] Formal methods for discrete-time dynamical systems
In control theory, complex models of physical processes, such as systems of differential or
difference equations, are usually checked against simple specifications, such as stability …
difference equations, are usually checked against simple specifications, such as stability …
Computational modeling, formal analysis, and tools for systems biology
As the amount of biological data in the public domain grows, so does the range of modeling
and analysis techniques employed in systems biology. In recent years, a number of …
and analysis techniques employed in systems biology. In recent years, a number of …
Foundations for the design and implementation of synthetic genetic circuits
Synthetic gene circuits are designed to program new biological behaviour, dynamics and
logic control. For all but the simplest synthetic phenotypes, this requires a structured …
logic control. For all but the simplest synthetic phenotypes, this requires a structured …
Setting the standard in synthetic biology
A Arkin - Nature biotechnology, 2008 - nature.com
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Precise parameter synthesis for stochastic biochemical systems
We consider the problem of synthesising rate parameters for stochastic biochemical
networks so that a given time-bounded CSL property is guaranteed to hold, or, in the case of …
networks so that a given time-bounded CSL property is guaranteed to hold, or, in the case of …
[HTML][HTML] System design of stochastic models using robustness of temporal properties
Stochastic models such as Continuous-Time Markov Chains (CTMC) and Stochastic Hybrid
Automata (SHA) are powerful formalisms to model and to reason about the dynamics of …
Automata (SHA) are powerful formalisms to model and to reason about the dynamics of …
Formal guarantees in data-driven model identification and control synthesis
For many performance-critical control systems, an accurate (simple) model is not available
in practice. Thus, designing controllers with formal performance guarantees is challenging …
in practice. Thus, designing controllers with formal performance guarantees is challenging …
A general computational method for robustness analysis with applications to synthetic gene networks
Motivation: Robustness is the capacity of a system to maintain a function in the face of
perturbations. It is essential for the correct functioning of natural and engineered biological …
perturbations. It is essential for the correct functioning of natural and engineered biological …