The recent advent of high-throughput sequencing machines producing big amounts of short
reads has boosted the interest in efficient string searching techniques. As of today, many …

Spurred by a widening gap between hardware accelerators and traditional processors,
numerous bioinformatics applications have harnessed the computing power of GPUs and …

FM-index is a compact data structure suitable for fast matches of short reads to large
reference genomes. The matching algorithm using this index exhibits irregular memory …

The FM-index is a data structure used in genomics for exact search of input sequences over
large reference genomes. Algorithms based on the FM-index show an irregular memory …

Emotional interaction plays an important role in human-computer interaction domains. One
of the major limitations in the study of emotion interaction is the lack of databases. This …

Automated software diversity promises to reduce an attacker's ability to reuse exploits across
application instances. However, many questions remain regarding the efficacy of and …

The FM-index is a data structure which is seeing more and more pervasive use, in particular
in the field of high-throughput bioinformatics. Algorithms based on it show a pseudo-random …

This paper describes a performance model for read alignment problem, one of the most
computationally intensive tasks in bioinformatics. We adapted Burrows Wheeler transform …

After the reference genomes of many organisms are sequenced in the post-genetic era, an
important issue is to do the re-sequencing of individual genomes with high-throughput …

Bioinformatics is a quickly emerging area of science with many important applications to
human life. Sequence alignment in various forms is one of the main instruments used in …