[HTML][HTML] On structural and practical identifiability

FG Wieland, AL Hauber, M Rosenblatt… - Current Opinion in …, 2021 - Elsevier
We discuss issues of structural and practical identifiability of partially observed differential
equations which are often applied in systems biology. The development of mathematical …

Sensitivity analysis approaches applied to systems biology models

Z Zi - IET systems biology, 2011 - IET
With the rising application of systems biology, sensitivity analysis methods have been widely
applied to study the biological systems, including metabolic networks, signalling pathways …

Lessons learned from quantitative dynamical modeling in systems biology

A Raue, M Schilling, J Bachmann, A Matteson… - PloS one, 2013 - journals.plos.org
Due to the high complexity of biological data it is difficult to disentangle cellular processes
relying only on intuitive interpretation of measurements. A Systems Biology approach that …

Six distinct NFκB signaling codons convey discrete information to distinguish stimuli and enable appropriate macrophage responses

A Adelaja, B Taylor, KM Sheu, Y Liu, S Luecke… - Immunity, 2021 - cell.com
Macrophages initiate inflammatory responses via the transcription factor NFκB. The temporal
pattern of NFκB activity determines which genes are expressed and thus, the type of …

Comparison of approaches for parameter identifiability analysis of biological systems

A Raue, J Karlsson, MP Saccomani, M Jirstrand… - …, 2014 - academic.oup.com
Motivation: Modeling of dynamical systems using ordinary differential equations is a popular
approach in the field of Systems Biology. The amount of experimental data that are used to …

The molecular basis for functional plasticity in type I interferon signaling

G Schreiber, J Piehler - Trends in immunology, 2015 - cell.com
Type I interferons (IFNs) are best known for their role in innate immunity, but they are also
involved in other functions including immunomodulation, restricting proliferation, cancer …

Emerging EPO and EPO receptor regulators and signal transducers

D Kuhrt, DM Wojchowski - Blood, The Journal of the American …, 2015 - ashpublications.org
As essential mediators of red cell production, erythropoietin (EPO) and its cell surface
receptor (EPO receptor [EPOR]) have been intensely studied. Early investigations defined …

Profile likelihood in systems biology

C Kreutz, A Raue, D Kaschek, J Timmer - The FEBS journal, 2013 - Wiley Online Library
Inferring knowledge about biological processes by a mathematical description is a major
characteristic of Systems Biology. To understand and predict system's behavior the available …

Addressing parameter identifiability by model-based experimentation

A Raue, C Kreutz, T Maiwald, U Klingmuller, J Timmer - IET systems biology, 2011 - IET
Mathematical description of biological processes such as gene regulatory networks or
signalling pathways by dynamic models utilising ordinary differential equations faces …

Joining forces of Bayesian and frequentist methodology: a study for inference in the presence of non-identifiability

A Raue, C Kreutz, FJ Theis… - … Transactions of the …, 2013 - royalsocietypublishing.org
Increasingly complex applications involve large datasets in combination with nonlinear and
high-dimensional mathematical models. In this context, statistical inference is a challenging …