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[HTML][HTML] On structural and practical identifiability
We discuss issues of structural and practical identifiability of partially observed differential
equations which are often applied in systems biology. The development of mathematical …
equations which are often applied in systems biology. The development of mathematical …
Sensitivity analysis approaches applied to systems biology models
Z Zi - IET systems biology, 2011 - IET
With the rising application of systems biology, sensitivity analysis methods have been widely
applied to study the biological systems, including metabolic networks, signalling pathways …
applied to study the biological systems, including metabolic networks, signalling pathways …
Lessons learned from quantitative dynamical modeling in systems biology
A Raue, M Schilling, J Bachmann, A Matteson… - PloS one, 2013 - journals.plos.org
Due to the high complexity of biological data it is difficult to disentangle cellular processes
relying only on intuitive interpretation of measurements. A Systems Biology approach that …
relying only on intuitive interpretation of measurements. A Systems Biology approach that …
Six distinct NFκB signaling codons convey discrete information to distinguish stimuli and enable appropriate macrophage responses
Macrophages initiate inflammatory responses via the transcription factor NFκB. The temporal
pattern of NFκB activity determines which genes are expressed and thus, the type of …
pattern of NFκB activity determines which genes are expressed and thus, the type of …
Comparison of approaches for parameter identifiability analysis of biological systems
Motivation: Modeling of dynamical systems using ordinary differential equations is a popular
approach in the field of Systems Biology. The amount of experimental data that are used to …
approach in the field of Systems Biology. The amount of experimental data that are used to …
The molecular basis for functional plasticity in type I interferon signaling
G Schreiber, J Piehler - Trends in immunology, 2015 - cell.com
Type I interferons (IFNs) are best known for their role in innate immunity, but they are also
involved in other functions including immunomodulation, restricting proliferation, cancer …
involved in other functions including immunomodulation, restricting proliferation, cancer …
Emerging EPO and EPO receptor regulators and signal transducers
D Kuhrt, DM Wojchowski - Blood, The Journal of the American …, 2015 - ashpublications.org
As essential mediators of red cell production, erythropoietin (EPO) and its cell surface
receptor (EPO receptor [EPOR]) have been intensely studied. Early investigations defined …
receptor (EPO receptor [EPOR]) have been intensely studied. Early investigations defined …
Profile likelihood in systems biology
Inferring knowledge about biological processes by a mathematical description is a major
characteristic of Systems Biology. To understand and predict system's behavior the available …
characteristic of Systems Biology. To understand and predict system's behavior the available …
Addressing parameter identifiability by model-based experimentation
Mathematical description of biological processes such as gene regulatory networks or
signalling pathways by dynamic models utilising ordinary differential equations faces …
signalling pathways by dynamic models utilising ordinary differential equations faces …
Joining forces of Bayesian and frequentist methodology: a study for inference in the presence of non-identifiability
Increasingly complex applications involve large datasets in combination with nonlinear and
high-dimensional mathematical models. In this context, statistical inference is a challenging …
high-dimensional mathematical models. In this context, statistical inference is a challenging …