Two-photon calcium imaging of neuronal activity

C Grienberger, A Giovannucci, W Zeiger… - Nature Reviews …, 2022 - nature.com
In vivo two-photon calcium imaging (2PCI) is a technique used for recording neuronal
activity in the intact brain. It is based on the principle that, when neurons fire action …

Making sense of astrocytic calcium signals—from acquisition to interpretation

A Semyanov, C Henneberger, A Agarwal - Nature Reviews …, 2020 - nature.com
Astrocytes functionally interact with neurons and with other brain cells. Although not
electrically excitable, astrocytes display a complex repertoire of intracellular Ca2+ signalling …

Simultaneous denoising, deconvolution, and demixing of calcium imaging data

EA Pnevmatikakis, D Soudry, Y Gao, TA Machado… - Neuron, 2016 - cell.com
We present a modular approach for analyzing calcium imaging recordings of large neuronal
ensembles. Our goal is to simultaneously identify the locations of the neurons, demix …

A suite of transgenic driver and reporter mouse lines with enhanced brain-cell-type targeting and functionality

TL Daigle, L Madisen, TA Hage, MT Valley, U Knoblich… - Cell, 2018 - cell.com
Modern genetic approaches are powerful in providing access to diverse cell types in the
brain and facilitating the study of their function. Here, we report a large set of driver and …

Time and experience differentially affect distinct aspects of hippocampal representational drift

N Geva, D Deitch, A Rubin, Y Ziv - Neuron, 2023 - cell.com
Hippocampal activity is critical for spatial memory. Within a fixed, familiar environment,
hippocampal codes gradually change over timescales of days to weeks—a phenomenon …

Suite2p: beyond 10,000 neurons with standard two-photon microscopy

M Pachitariu, C Stringer, S Schröder, M Dipoppa… - BioRxiv, 2016 - biorxiv.org
The combination of two-photon microscopy recordings and powerful calcium-dependent
fluorescent sensors enables simultaneous recording of unprecedentedly large populations …

CaImAn an open source tool for scalable calcium imaging data analysis

A Giovannucci, J Friedrich, P Gunn, J Kalfon, BL Brown… - elife, 2019 - elifesciences.org
Advances in fluorescence microscopy enable monitoring larger brain areas in-vivo with finer
time resolution. The resulting data rates require reproducible analysis pipelines that are …

Hippocampal neurogenesis confers stress resilience by inhibiting the ventral dentate gyrus

C Anacker, VM Luna, GS Stevens, A Millette, R Shores… - Nature, 2018 - nature.com
Adult neurogenesis in the dentate gyrus of the hippocampus is highly regulated by
environmental influences, and functionally implicated in behavioural responses to stress …

All-optical physiology resolves a synaptic basis for behavioral timescale plasticity

LZ Fan, DK Kim, JH Jennings, H Tian, PY Wang… - Cell, 2023 - cell.com
Learning has been associated with modifications of synaptic and circuit properties, but the
precise changes storing information in mammals have remained largely unclear. We …

Miniaturized integration of a fluorescence microscope

KK Ghosh, LD Burns, ED Cocker, A Nimmerjahn… - Nature …, 2011 - nature.com
The light microscope is traditionally an instrument of substantial size and expense. Its
miniaturized integration would enable many new applications based on mass-producible …