When machine learning meets molecular synthesis

JCA Oliveira, J Frey, SQ Zhang, LC Xu, X Li, SW Li… - Trends in Chemistry, 2022 - cell.com
The recent synergy of machine learning (ML) with molecular synthesis has emerged as an
increasingly powerful platform in organic synthesis and catalysis. This merger has set the …

Virtual ligand strategy in transition metal catalysis toward highly efficient elucidation of reaction mechanisms and computational catalyst design

W Matsuoka, Y Harabuchi, S Maeda - ACS Catalysis, 2023 - ACS Publications
In the development of transition metal catalysis, the process of ligand screening, where an
optimal ligand for a reaction of interest is identified from a large variety of candidate …

Tartarus: A benchmarking platform for realistic and practical inverse molecular design

AK Nigam, R Pollice, G Tom, K Jorner… - Advances in …, 2023 - proceedings.neurips.cc
The efficient exploration of chemical space to design molecules with intended properties
enables the accelerated discovery of drugs, materials, and catalysts, and is one of the most …

OSCAR: an extensive repository of chemically and functionally diverse organocatalysts

S Gallarati, P van Gerwen, R Laplaza, S Vela… - Chemical …, 2022 - pubs.rsc.org
The automated construction of datasets has become increasingly relevant in computational
chemistry. While transition-metal catalysis has greatly benefitted from bottom-up or top-down …

Computational evolution of new catalysts for the Morita–Baylis–Hillman reaction

J Seumer, J Kirschner Solberg Hansen… - Angewandte Chemie …, 2023 - Wiley Online Library
We present a de novo discovery of an efficient catalyst of the Morita–Baylis–Hillman (MBH)
reaction by searching chemical space for molecules that lower the estimated barrier of the …

Reaction-Agnostic Featurization of Bidentate Ligands for Bayesian Ridge Regression of Enantioselectivity

AA Schoepfer, R Laplaza, MD Wodrich, J Waser… - ACS …, 2024 - ACS Publications
Chiral ligands are important components in asymmetric homogeneous catalysis, but their
synthesis and screening can be both time-consuming and resource-intensive. Data-driven …

Using Machine Learning to Predict the Antibacterial Activity of Ruthenium Complexes

M Orsi, B Shing Loh, C Weng… - Angewandte Chemie …, 2024 - Wiley Online Library
Rising antimicrobial resistance (AMR) and lack of innovation in the antibiotic pipeline
necessitate novel approaches to discovering new drugs. Metal complexes have proven to …

The (not so) simple prediction of enantioselectivity–a pipeline for high-fidelity computations

R Laplaza, JG Sobez, MD Wodrich, M Reiher… - Chemical …, 2022 - pubs.rsc.org
The computation of reaction selectivity represents an appealing complementary route to
experimental studies and a powerful means to refine catalyst design strategies. Accurately …

Overcoming the Pitfalls of Computing Reaction Selectivity from Ensembles of Transition States

R Laplaza, MD Wodrich… - The journal of physical …, 2024 - ACS Publications
The prediction of reaction selectivity is a challenging task for computational chemistry, not
only because many molecules adopt multiple conformations but also due to the exponential …

Beyond predefined ligand libraries: A genetic algorithm approach for de novo discovery of catalysts for the Suzuki coupling reactions

J Seumer, JH Jensen - PeerJ Physical Chemistry, 2025 - peerj.com
This study introduces a novel approach for the de novo design of transition metal catalysts,
leveraging the power of genetic algorithms and density functional theory calculations. By …