Therapeutic strategies for COVID-19: progress and lessons learned

G Li, R Hilgenfeld, R Whitley, E De Clercq - Nature Reviews Drug …, 2023 - nature.com
Abstract The coronavirus disease 2019 (COVID-19) pandemic has stimulated tremendous
efforts to develop therapeutic strategies that target severe acute respiratory syndrome …

Genome mining for new enzyme chemistry

DT Nguyen, DA Mitchell, WA van der Donk - ACS catalysis, 2024 - ACS Publications
A revolution in the field of biocatalysis has enabled scalable access to compounds of high
societal values using enzymes. The construction of biocatalytic routes relies on the reservoir …

Systematic mining of the human microbiome identifies antimicrobial peptides with diverse activity spectra

AM King, Z Zhang, E Glassey, P Siuti, J Clardy… - Nature …, 2023 - nature.com
Human-associated bacteria secrete modified peptides to control host physiology and
remodel the microbiota species composition. Here we scanned 2,229 Human Microbiome …

De novo discovery of thiopeptide pseudo-natural products acting as potent and selective TNIK kinase inhibitors

AA Vinogradov, Y Zhang, K Hamada… - Journal of the …, 2022 - ACS Publications
Bioengineering of ribosomally synthesized and post-translationally modified peptides
(RiPPs) is an emerging approach to explore the diversity of pseudo-natural product …

Deep Learning-Driven Library Design for the De Novo Discovery of Bioactive Thiopeptides

JS Chang, AA Vinogradov, Y Zhang, Y Goto… - ACS Central …, 2023 - ACS Publications
Broad substrate tolerance of ribosomally synthesized and post-translationally modified
peptide (RiPP) biosynthetic enzymes has allowed numerous strategies for RiPP …

Emulating nonribosomal peptides with ribosomal biosynthetic strategies

S Mordhorst, F Ruijne, AL Vagstad, OP Kuipers… - RSC Chemical …, 2023 - pubs.rsc.org
Peptide natural products are important lead structures for human drugs and many
nonribosomal peptides possess antibiotic activity. This makes them interesting targets for …

Genome mining unveils a class of ribosomal peptides with two amino termini

H Ren, SR Dommaraju, C Huang, H Cui, Y Pan… - Nature …, 2023 - nature.com
The era of inexpensive genome sequencing and improved bioinformatics tools has
reenergized the study of natural products, including the ribosomally synthesized and post …

Inteins: A Swiss army knife for synthetic biology

S Anastassov, M Filo, M Khammash - Biotechnology Advances, 2024 - Elsevier
Inteins are proteins found in nature that execute protein splicing. Among them, split inteins
stand out for their versatility and adaptability, presenting creative solutions for addressing …

High-throughput screen reveals the structure–activity relationship of the antimicrobial lasso peptide ubonodin

A Thokkadam, T Do, X Ran, MP Brynildsen… - ACS Central …, 2023 - ACS Publications
The Burkholderia cepacia complex (Bcc) is a group of bacteria including opportunistic
human pathogens. Immunocompromised individuals and cystic fibrosis patients are …

[HTML][HTML] Engineering ribosomally synthesized and posttranslationally modified peptides as new antibiotics

AL Vagstad - Current Opinion in Biotechnology, 2023 - Elsevier
Highlights•Peptide diversification by posttranslational modification of precursor
proteins.•Genome mining functionally diverse protein superfamilies yields RiPP …