Molecular and evolutionary processes generating variation in gene expression

MS Hill, P Vande Zande, PJ Wittkopp - Nature Reviews Genetics, 2021 - nature.com
Heritable variation in gene expression is common within and between species. This
variation arises from mutations that alter the form or function of molecular gene regulatory …

Causes of molecular convergence and parallelism in protein evolution

JF Storz - Nature Reviews Genetics, 2016 - nature.com
To what extent is the convergent evolution of protein function attributable to convergent or
parallel changes at the amino acid level? The mutations that contribute to adaptive protein …

The QTN program and the alleles that matter for evolution: all that's gold does not glitter

MV Rockman - Evolution, 2012 - academic.oup.com
The search for the alleles that matter, the quantitative trait nucleotides (QTNs) that underlie
heritable variation within populations and divergence among them, is a popular pursuit. But …

The loci of repeated evolution: a catalog of genetic hotspots of phenotypic variation

A Martin, V Orgogozo - Evolution, 2013 - academic.oup.com
What is the nature of the genetic changes underlying phenotypic evolution? We have
catalogued 1008 alleles described in the literature that cause phenotypic differences among …

Advances and limits of using population genetics to understand local adaptation

P Tiffin, J Ross-Ibarra - Trends in ecology & evolution, 2014 - cell.com
Local adaptation shapes species diversity, can be a step** stone to ecological speciation,
and can facilitate species range expansion. Population genetic analyses, which complement …

The probability of genetic parallelism and convergence in natural populations

GL Conte, ME Arnegard… - Proceedings of the …, 2012 - royalsocietypublishing.org
Genomic and genetic methods allow investigation of how frequently the same genes are
used by different populations during adaptive evolution, yielding insights into the …

Evolutionary genetics of plant adaptation

JT Anderson, JH Willis, T Mitchell-Olds - Trends in Genetics, 2011 - cell.com
Plants provide unique opportunities to study the mechanistic basis and evolutionary
processes of adaptation to diverse environmental conditions. Complementary laboratory …

Lessons from domestication: targeting cis-regulatory elements for crop improvement

G Swinnen, A Goossens, L Pauwels - Trends in plant science, 2016 - cell.com
Domestication of wild plant species has provided us with crops that serve our human
nutritional needs. Advanced DNA sequencing has propelled the unveiling of underlying …

Multiple mechanisms explain loss of anthocyanins from betalain‐pigmented Caryophyllales, including repeated wholesale loss of a key anthocyanidin synthesis …

B Pucker, N Walker‐Hale, J Dzurlic, WC Yim… - New …, 2024 - Wiley Online Library
In this study, we investigate the genetic mechanisms responsible for the loss of
anthocyanins in betalain‐pigmented Caryophyllales, considering our hypothesis of multiple …

Evolutionary processes from the perspective of flowering time diversity

A Gaudinier, BK Blackman - New Phytologist, 2020 - Wiley Online Library
Although it is well appreciated that genetic studies of flowering time regulation have led to
fundamental advances in the fields of molecular and developmental biology, the ways in …