The Human Gene Mutation Database: towards a comprehensive repository of inherited mutation data for medical research, genetic diagnosis and next-generation …
PD Stenson, M Mort, EV Ball, K Evans, M Hayden… - Human genetics, 2017 - Springer
Abstract The Human Gene Mutation Database (HGMD®) constitutes a comprehensive
collection of published germline mutations in nuclear genes that underlie, or are closely …
collection of published germline mutations in nuclear genes that underlie, or are closely …
Genome interpretation using in silico predictors of variant impact
Estimating the effects of variants found in disease driver genes opens the door to
personalized therapeutic opportunities. Clinical associations and laboratory experiments …
personalized therapeutic opportunities. Clinical associations and laboratory experiments …
Sixty-five years of the long march in protein secondary structure prediction: the final stretch?
Protein secondary structure prediction began in 1951 when Pauling and Corey predicted
helical and sheet conformations for protein polypeptide backbone even before the first …
helical and sheet conformations for protein polypeptide backbone even before the first …
SPIDER2: a package to predict secondary structure, accessible surface area, and main-chain torsional angles by deep neural networks
Predicting one-dimensional structure properties has played an important role to improve
prediction of protein three-dimensional structures and functions. The most commonly …
prediction of protein three-dimensional structures and functions. The most commonly …
Assessing the pathogenicity of insertion and deletion variants with the variant effect scoring tool (VEST‐Indel)
Insertion/deletion variants (indels) alter protein sequence and length, yet are highly
prevalent in healthy populations, presenting a challenge to bioinformatics classifiers …
prevalent in healthy populations, presenting a challenge to bioinformatics classifiers …
Effects of short indels on protein structure and function in human genomes
Insertions and deletions (indels) represent the second most common type of genetic
variations in human genomes. Indels can be deleterious and contribute to disease …
variations in human genomes. Indels can be deleterious and contribute to disease …
EASE-MM: sequence-based prediction of mutation-induced stability changes with feature-based multiple models
Protein engineering and characterisation of non-synonymous single nucleotide variants
(SNVs) require accurate prediction of protein stability changes (ΔΔ G u) induced by single …
(SNVs) require accurate prediction of protein stability changes (ΔΔ G u) induced by single …
When loss-of-function is loss of function: assessing mutational signatures and impact of loss-of-function genetic variants
Motivation Loss-of-function genetic variants are frequently associated with severe clinical
phenotypes, yet many are present in the genomes of healthy individuals. The available …
phenotypes, yet many are present in the genomes of healthy individuals. The available …
Computational methods for the pharmacogenetic interpretation of next generation sequencing data
Y Zhou, K Fujikura, S Mkrtchian… - Frontiers in …, 2018 - frontiersin.org
Up to half of all patients do not respond to pharmacological treatment as intended. A
substantial fraction of these inter-individual differences is due to heritable factors and a …
substantial fraction of these inter-individual differences is due to heritable factors and a …
Computational and experimental methods for classifying variants of unknown clinical significance
The increase in sequencing capacity, reduction in costs, and national and international
coordinated efforts have led to the widespread introduction of next-generation sequencing …
coordinated efforts have led to the widespread introduction of next-generation sequencing …