Opportunities and challenges for ChatGPT and large language models in biomedicine and health

S Tian, Q **, L Yeganova, PT Lai, Q Zhu… - Briefings in …, 2024 - academic.oup.com
ChatGPT has drawn considerable attention from both the general public and domain experts
with its remarkable text generation capabilities. This has subsequently led to the emergence …

Named entity recognition and relation detection for biomedical information extraction

N Perera, M Dehmer, F Emmert-Streib - Frontiers in cell and …, 2020 - frontiersin.org
The number of scientific publications in the literature is steadily growing, containing our
knowledge in the biomedical, health, and clinical sciences. Since there is currently no …

Driving and suppressing the human language network using large language models

G Tuckute, A Sathe, S Srikant, M Taliaferro… - Nature Human …, 2024 - nature.com
Transformer models such as GPT generate human-like language and are predictive of
human brain responses to language. Here, using functional-MRI-measured brain responses …

A survey on semantic processing techniques

R Mao, K He, X Zhang, G Chen, J Ni, Z Yang… - Information …, 2024 - Elsevier
Semantic processing is a fundamental research domain in computational linguistics. In the
era of powerful pre-trained language models and large language models, the advancement …

Information extraction from electronic medical documents: state of the art and future research directions

MY Landolsi, L Hlaoua, L Ben Romdhane - Knowledge and Information …, 2023 - Springer
In the medical field, a doctor must have a comprehensive knowledge by reading and writing
narrative documents, and he is responsible for every decision he takes for patients …

Collabonet: collaboration of deep neural networks for biomedical named entity recognition

W Yoon, CH So, J Lee, J Kang - BMC bioinformatics, 2019 - Springer
Background Finding biomedical named entities is one of the most essential tasks in
biomedical text mining. Recently, deep learning-based approaches have been applied to …

An annotated dataset of coreference in English literature

D Bamman, O Lewke, A Mansoor - arxiv preprint arxiv:1912.01140, 2019 - arxiv.org
We present in this work a new dataset of coreference annotations for works of literature in
English, covering 29,103 mentions in 210,532 tokens from 100 works of fiction. This dataset …

Metabolomics and multi-omics integration: a survey of computational methods and resources

T Eicher, G Kinnebrew, A Patt, K Spencer, K Ying, Q Ma… - Metabolites, 2020 - mdpi.com
As researchers are increasingly able to collect data on a large scale from multiple clinical
and omics modalities, multi-omics integration is becoming a critical component of …

Transformers in healthcare: A survey

S Nerella, S Bandyopadhyay, J Zhang… - arxiv preprint arxiv …, 2023 - arxiv.org
With Artificial Intelligence (AI) increasingly permeating various aspects of society, including
healthcare, the adoption of the Transformers neural network architecture is rapidly changing …

A survey on event extraction for natural language understanding: Riding the biomedical literature wave

G Frisoni, G Moro, A Carbonaro - IEEE Access, 2021 - ieeexplore.ieee.org
Motivation: The scientific literature embeds an enormous amount of relational knowledge,
encompassing interactions between biomedical entities, like proteins, drugs, and symptoms …