Feature selection revisited in the single-cell era

P Yang, H Huang, C Liu - Genome Biology, 2021 - Springer
Recent advances in single-cell biotechnologies have resulted in high-dimensional datasets
with increased complexity, making feature selection an essential technique for single-cell …

Integrating multiple 'omics' analysis for microbial biology: application and methodologies

W Zhang, F Li, L Nie - Microbiology, 2010 - microbiologyresearch.org
Recent advances in various 'omics' technologies enable quantitative monitoring of the
abundance of various biological molecules in a high-throughput manner, and thus allow …

Zymomonas mobilis as a model system for production of biofuels and biochemicals

S Yang, Q Fei, Y Zhang, LM Contreras… - Microbial …, 2016 - Wiley Online Library
Zymomonas mobilis is a natural ethanologen with many desirable industrial biocatalyst
characteristics. In this review, we will discuss work to develop Z. mobilis as a model system …

Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses

A Mustroph, SC Lee, T Oosumi, ME Zanetti… - Plant …, 2010 - academic.oup.com
High-throughput technology has facilitated genome-scale analyses of transcriptomic
adjustments in response to environmental perturbations with an oxygen deprivation …

Zymomonas mobilis: a novel platform for future biorefineries

MX He, B Wu, H Qin, ZY Ruan, FR Tan, JL Wang… - Biotechnology for …, 2014 - Springer
Biosynthesis of liquid fuels and biomass-based building block chemicals from
microorganisms have been regarded as a competitive alternative route to traditional …

Characterization and repurposing of the endogenous Type IF CRISPR–Cas system of Zymomonas mobilis for genome engineering

Y Zheng, J Han, B Wang, X Hu, R Li… - Nucleic acids …, 2019 - academic.oup.com
Application of CRISPR-based technologies in non-model microorganisms is currently very
limited. Here, we reported efficient genome engineering of an important industrial …

Advances and prospects in metabolic engineering of Zymomonas mobilis

X Wang, Q He, Y Yang, J Wang, K Haning, Y Hu… - Metabolic …, 2018 - Elsevier
Biorefinery of biomass-based biofuels and biochemicals by microorganisms is a competitive
alternative of traditional petroleum refineries. Zymomonas mobilis is a natural ethanologen …

[HTML][HTML] Multi-omics and metabolic modelling pipelines: challenges and tools for systems microbiology

M Fondi, P Liò - Microbiological research, 2015 - Elsevier
Integrated-omics approaches are quickly spreading across microbiology research labs,
leading to (i) the possibility of detecting previously hidden features of microbial cells like …

Metabolic engineering of Zymomonas mobilis for 2,3-butanediol production from lignocellulosic biomass sugars

S Yang, A Mohagheghi, MA Franden, YC Chou… - Biotechnology for …, 2016 - Springer
Background To develop pathways for advanced biofuel production, and to understand the
impact of host metabolism and environmental conditions on heterologous pathway …

Efficient Degradation of Lignocellulosic Plant Biomass, without Pretreatment, by the Thermophilic Anaerobe “Anaerocellum thermophilum” DSM 6725

SJ Yang, I Kataeva, SD Hamilton-Brehm… - Applied and …, 2009 - journals.asm.org
Very few cultivated microorganisms can degrade lignocellulosic biomass without chemical
pretreatment. We show here that “Anaerocellum thermophilum” DSM 6725, an anaerobic …