Cyclic peptides for drug development

X Ji, AL Nielsen, C Heinis - Angewandte Chemie, 2024 - Wiley Online Library
Cyclic peptides are fascinating molecules abundantly found in nature and exploited as
molecular format for drug development as well as other applications, ranging from research …

Protein design: From the aspect of water solubility and stability

R Qing, S Hao, E Smorodina, D **, A Zalevsky… - Chemical …, 2022 - ACS Publications
Water solubility and structural stability are key merits for proteins defined by the primary
sequence and 3D-conformation. Their manipulation represents important aspects of the …

Harnessing protein folding neural networks for peptide–protein docking

T Tsaban, JK Varga, O Avraham, Z Ben-Aharon… - Nature …, 2022 - nature.com
Highly accurate protein structure predictions by deep neural networks such as AlphaFold2
and RoseTTAFold have tremendous impact on structural biology and beyond. Here, we …

Accurate de novo design of membrane-traversing macrocycles

G Bhardwaj, J O'Connor, S Rettie, YH Huang… - Cell, 2022 - cell.com
We use computational design coupled with experimental characterization to systematically
investigate the design principles for macrocycle membrane permeability and oral …

Expansive discovery of chemically diverse structured macrocyclic oligoamides

PJ Salveson, AP Moyer, MY Said, G Gӧkçe, X Li… - Science, 2024 - science.org
Small macrocycles with four or fewer amino acids are among the most potent natural
products known, but there is currently no way to systematically generate such compounds …

Cyclic peptide screening methods for preclinical drug discovery: miniperspective

X Li, TW Craven, PM Levine - Journal of Medicinal Chemistry, 2022 - ACS Publications
Cyclic peptides are among the most diverse architectures for current drug discovery efforts.
Their size, stability, and ease of synthesis provide attractive scaffolds to engage and …

Design and structural validation of peptide–drug conjugate ligands of the kappa-opioid receptor

E Muratspahić, K Deibler, J Han, N Tomašević… - Nature …, 2023 - nature.com
Despite the increasing number of GPCR structures and recent advances in peptide design,
the development of efficient technologies allowing rational design of high-affinity peptide …

Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites

P Hosseinzadeh, PR Watson, TW Craven, X Li… - Nature …, 2021 - nature.com
Despite recent success in computational design of structured cyclic peptides, de novo
design of cyclic peptides that bind to any protein functional site remains difficult. To address …

Synthetic molecular evolution of antimicrobial peptides

CH Chen, T Bepler, K Pepper, D Fu, TK Lu - Current opinion in …, 2022 - Elsevier
Highlights•Various peptide design methods have facilitated peptide–drug
development.•Only a few peptide therapeutics have entered the antibiotic market in the past …

Accurate de novo design of heterochiral protein–protein interactions

K Sun, S Li, B Zheng, Y Zhu, T Wang, M Liang, Y Yao… - Cell Research, 2024 - nature.com
Abiotic d-proteins that selectively bind to natural l-proteins have gained significant
biotechnological interest. However, the underlying structural principles governing such …