[HTML][HTML] Ecological and functional roles of bacteriophages in contrasting environments: marine, terrestrial and human gut

TL Brown, OJ Charity, EM Adriaenssens - Current Opinion in Microbiology, 2022 - Elsevier
Highlights•Phages are abundant within ecosystems, but their role is often understated.•
Ecological success models can help explain observed phage–bacteria …

Diversity and ecology of microbial sulfur metabolism

Z Zhou, PQ Tran, ES Cowley… - Nature Reviews …, 2024 - nature.com
Sulfur plays a pivotal role in interactions within the atmosphere, lithosphere, pedosphere,
hydrosphere and biosphere, and the functioning of living organisms. In the Earth's crust …

Viral community-wide auxiliary metabolic genes differ by lifestyles, habitats, and hosts

XQ Luo, P Wang, JL Li, M Ahmad, L Duan, LZ Yin… - Microbiome, 2022 - Springer
Background Viral-encoded auxiliary metabolic genes (AMGs) are important toolkits for
modulating their hosts' metabolisms and the microbial-driven biogeochemical cycles …

Mesophilic and thermophilic viruses are associated with nutrient cycling during hyperthermophilic composting

H Liao, C Liu, C Ai, T Gao, QE Yang, Z Yu… - The ISME …, 2023 - academic.oup.com
While decomposition of organic matter by bacteria plays a major role in nutrient cycling in
terrestrial ecosystems, the significance of viruses remains poorly understood. Here we …

Deep sea sediments associated with cold seeps are a subsurface reservoir of viral diversity

Z Li, D Pan, G Wei, W Pi, C Zhang, JH Wang… - The ISME …, 2021 - academic.oup.com
In marine ecosystems, viruses exert control on the composition and metabolism of microbial
communities, influencing overall biogeochemical cycling. Deep sea sediments associated …

Borgs are giant genetic elements with potential to expand metabolic capacity

B Al-Shayeb, MC Schoelmerich, J West-Roberts… - Nature, 2022 - nature.com
Anaerobic methane oxidation exerts a key control on greenhouse gas emissions, yet factors
that modulate the activity of microorganisms performing this function remain poorly …

COBRA improves the completeness and contiguity of viral genomes assembled from metagenomes

LX Chen, JF Banfield - Nature Microbiology, 2024 - nature.com
Viruses are often studied using metagenome-assembled sequences, but genome
incompleteness hampers comprehensive and accurate analyses. Contig Overlap Based Re …

Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages

K Kieft, Z Zhou, RE Anderson, A Buchan… - Nature …, 2021 - nature.com
Microbial sulfur metabolism contributes to biogeochemical cycling on global scales. Sulfur
metabolizing microbes are infected by phages that can encode auxiliary metabolic genes …

Viral potential to modulate microbial methane metabolism varies by habitat

ZP Zhong, J Du, S Köstlbacher, P Pjevac… - Nature …, 2024 - nature.com
Methane is a potent greenhouse gas contributing to global warming. Microorganisms largely
drive the biogeochemical cycling of methane, yet little is known about viral contributions to …

Methane-derived carbon flows into host–virus networks at different trophic levels in soil

S Lee, ET Sieradzki, AM Nicolas… - Proceedings of the …, 2021 - National Acad Sciences
The concentration of atmospheric methane (CH4) continues to increase with microbial
communities controlling soil–atmosphere fluxes. While there is substantial knowledge of the …