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Metabolite damage and its repair or pre-emption
It is increasingly evident that metabolites suffer various kinds of damage, that such damage
happens in all organisms and that cells have dedicated systems for damage repair and …
happens in all organisms and that cells have dedicated systems for damage repair and …
Towards revealing the functions of all genes in plants
The great recent progress made in identifying the molecular parts lists of organisms
revealed the paucity of our understanding of what most of the parts do. In this review, we …
revealed the paucity of our understanding of what most of the parts do. In this review, we …
Metagenomic analysis reveals microbial functional redundancies and specificities in a soil under different tillage and crop-management regimes
Abstract Information about microbial functionality in agricultural soils is still scarce, and in
this study we used a shotgun metagenomic approach to compare different soil [conventional …
this study we used a shotgun metagenomic approach to compare different soil [conventional …
[PDF][PDF] Confronting the catalytic dark matter encoded by sequenced genomes
The post-genomic era has provided researchers with a deluge of protein sequences.
However, a significant fraction of the proteins encoded by sequenced genomes remains …
However, a significant fraction of the proteins encoded by sequenced genomes remains …
Diversity of the biosynthesis pathway for threonylcarbamoyladenosine (t6A), a universal modification of tRNA
The tRNA modification field has a rich literature covering biochemical analysis going back
more than 40 years, but many of the corresponding genes were only identified in the last …
more than 40 years, but many of the corresponding genes were only identified in the last …
Agricultural land use determines functional genetic diversity of soil microbial communities
Microbial communities play a major role in the degradation of soil organic matter (SOM) in
soils. Despite its significance, the functional diversity of the highly diverse microbial …
soils. Despite its significance, the functional diversity of the highly diverse microbial …
Essentiality of threonylcarbamoyladenosine (t6A), a universal tRNA modification, in bacteria
Threonylcarbamoyladenosine (t6 A) is a modified nucleoside universally conserved in t RNA
s in all three kingdoms of life. The recently discovered genes for t6 A synthesis, including tsa …
s in all three kingdoms of life. The recently discovered genes for t6 A synthesis, including tsa …
Microbial community responses to increased water and organic matter in the arid soils of the McMurdo Dry Valleys, Antarctica
The soils of the McMurdo Dry Valleys, Antarctica are an extreme polar desert, inhabited
exclusively by microscopic taxa. This region is on the threshold of anticipated climate …
exclusively by microscopic taxa. This region is on the threshold of anticipated climate …
Functional annotations of paralogs: a blessing and a curse
R Zallot, KJ Harrison, B Kolaczkowski… - Life, 2016 - mdpi.com
Gene duplication followed by mutation is a classic mechanism of neofunctionalization,
producing gene families with functional diversity. In some cases, a single point mutation is …
producing gene families with functional diversity. In some cases, a single point mutation is …
[HTML][HTML] Functional genomics of novel secondary metabolites from diverse cyanobacteria using untargeted metabolomics
Mass spectrometry-based metabolomics has become a powerful tool for the detection of
metabolites in complex biological systems and for the identification of novel metabolites. We …
metabolites in complex biological systems and for the identification of novel metabolites. We …