Unsupervised learning methods for molecular simulation data
Unsupervised learning is becoming an essential tool to analyze the increasingly large
amounts of data produced by atomistic and molecular simulations, in material science, solid …
amounts of data produced by atomistic and molecular simulations, in material science, solid …
Bottom-up coarse-graining: Principles and perspectives
Large-scale computational molecular models provide scientists a means to investigate the
effect of microscopic details on emergent mesoscopic behavior. Elucidating the relationship …
effect of microscopic details on emergent mesoscopic behavior. Elucidating the relationship …
Perspective: Advances, challenges, and insight for predictive coarse-grained models
WG Noid - The Journal of Physical Chemistry B, 2023 - ACS Publications
By averaging over atomic details, coarse-grained (CG) models provide profound
computational and conceptual advantages for studying soft materials. In particular, bottom …
computational and conceptual advantages for studying soft materials. In particular, bottom …
TorchMD: A deep learning framework for molecular simulations
Molecular dynamics simulations provide a mechanistic description of molecules by relying
on empirical potentials. The quality and transferability of such potentials can be improved …
on empirical potentials. The quality and transferability of such potentials can be improved …
[HTML][HTML] Coarse graining molecular dynamics with graph neural networks
Coarse graining enables the investigation of molecular dynamics for larger systems and at
longer timescales than is possible at an atomic resolution. However, a coarse graining …
longer timescales than is possible at an atomic resolution. However, a coarse graining …
A review on machine learning algorithms for the ionic liquid chemical space
There are thousands of papers published every year investigating the properties and
possible applications of ionic liquids. Industrial use of these exceptional fluids requires …
possible applications of ionic liquids. Industrial use of these exceptional fluids requires …
Machine learning coarse-grained potentials of protein thermodynamics
A generalized understanding of protein dynamics is an unsolved scientific problem, the
solution of which is critical to the interpretation of the structure-function relationships that …
solution of which is critical to the interpretation of the structure-function relationships that …
Learning matter: Materials design with machine learning and atomistic simulations
Conspectus Designing new materials is vital for addressing pressing societal challenges in
health, energy, and sustainability. The combination of physicochemical laws and empirical …
health, energy, and sustainability. The combination of physicochemical laws and empirical …
Chemically specific coarse‐graining of polymers: Methods and prospects
Coarse‐grained (CG) modeling is an invaluable tool for the study of polymers and other soft
matter systems due to the span of spatiotemporal scales that typify their physics and …
matter systems due to the span of spatiotemporal scales that typify their physics and …
Single-model uncertainty quantification in neural network potentials does not consistently outperform model ensembles
Neural networks (NNs) often assign high confidence to their predictions, even for points far
out of distribution, making uncertainty quantification (UQ) a challenge. When they are …
out of distribution, making uncertainty quantification (UQ) a challenge. When they are …