Picking the lock of coordination cage catalysis
The design principles of metallo-organic assembly reactions have facilitated access to
hundreds of coordination cages of varying size and shape. Many of these assemblies …
hundreds of coordination cages of varying size and shape. Many of these assemblies …
Universal QM/MM approaches for general nanoscale applications
Quantum mechanics/molecular mechanics (QM/MM) hybrid models allow one to address
chemical phenomena in complex molecular environments. Whereas this modeling approach …
chemical phenomena in complex molecular environments. Whereas this modeling approach …
Low-temperature plasma for biology, hygiene, and medicine: Perspective and roadmap
Plasma, the fourth and most pervasive state of matter in the visible universe, is a fascinating
medium that is connected to the beginning of our universe itself. Man-made plasmas are at …
medium that is connected to the beginning of our universe itself. Man-made plasmas are at …
Nanoscale chemical reaction exploration with a quantum magnifying glass
Nanoscopic systems exhibit diverse molecular substructures by which they facilitate specific
functions. Theoretical models of them, which aim at describing, understanding, and …
functions. Theoretical models of them, which aim at describing, understanding, and …
Strategies for the construction of machine-learning potentials for accurate and efficient atomic-scale simulations
AM Miksch, T Morawietz, J Kästner… - Machine Learning …, 2021 - iopscience.iop.org
Recent advances in machine-learning interatomic potentials have enabled the efficient
modeling of complex atomistic systems with an accuracy that is comparable to that of …
modeling of complex atomistic systems with an accuracy that is comparable to that of …
CHARMM-GUI Membrane Builder: Past, Current, and Future Developments and Applications
Molecular dynamics simulations of membranes and membrane proteins serve as
computational microscopes, revealing coordinated events at the membrane interface. As G …
computational microscopes, revealing coordinated events at the membrane interface. As G …
Perspectives on the Role of Enzymatic Biocatalysis for the Degradation of Plastic PET
RP Magalhães, JM Cunha, SF Sousa - International Journal of Molecular …, 2021 - mdpi.com
Plastics are highly durable and widely used materials. Current methodologies of plastic
degradation, elimination, and recycling are flawed. In recent years, biodegradation (the …
degradation, elimination, and recycling are flawed. In recent years, biodegradation (the …
H-Bonding Networks Dictate the Molecular Mechanism of H2O2 Activation by P450
X Zhang, Y Jiang, Q Chen, S Dong, Y Feng… - ACS …, 2021 - ACS Publications
Understanding the molecular basis for controlled H2O2 activation is of fundamental
importance for peroxide-driven catalysis by metalloenzymes. In addition to O2 activation in …
importance for peroxide-driven catalysis by metalloenzymes. In addition to O2 activation in …
Systematic QM region construction in QM/MM calculations based on uncertainty quantification
F Brandt, CR Jacob - Journal of Chemical Theory and …, 2022 - ACS Publications
While QM/MM studies of enzymatic reactions are widely used in computational chemistry,
the results of such studies are subject to numerous sources of uncertainty, and the effect of …
the results of such studies are subject to numerous sources of uncertainty, and the effect of …
Computer-aided understanding and engineering of enzymatic selectivity
L Wu, L Qin, Y Nie, Y Xu, YL Zhao - Biotechnology Advances, 2022 - Elsevier
Abstract Enzymes offering chemo-, regio-, and stereoselectivity enable the asymmetric
synthesis of high-value chiral molecules. Unfortunately, the drawback that naturally …
synthesis of high-value chiral molecules. Unfortunately, the drawback that naturally …