Karyopherin-mediated nucleocytoplasmic transport

CE Wing, HYJ Fung, YM Chook - Nature reviews Molecular cell biology, 2022 - nature.com
Efficient and regulated nucleocytoplasmic trafficking of macromolecules to the correct
subcellular compartment is critical for proper functions of the eukaryotic cell. The majority of …

Types of nuclear localization signals and mechanisms of protein import into the nucleus

J Lu, T Wu, B Zhang, S Liu, W Song, J Qiao… - Cell communication and …, 2021 - Springer
Nuclear localization signals (NLS) are generally short peptides that act as a signal fragment
that mediates the transport of proteins from the cytoplasm into the nucleus. This NLS …

Genetic variation associated with condensate dysregulation in disease

SF Banani, LK Afeyan, SW Hawken, JE Henninger… - Developmental cell, 2022 - cell.com
A multitude of cellular processes involve biomolecular condensates, which has led to the
suggestion that diverse pathogenic mutations may dysregulate condensates. Although proof …

Cargo transport through the nuclear pore complex at a glance

G Paci, J Caria, EA Lemke - Journal of cell science, 2021 - journals.biologists.com
Bidirectional transport of macromolecules across the nuclear envelope is a hallmark of
eukaryotic cells, in which the genetic material is compartmentalized inside the nucleus. The …

Plant proteome dynamics

J Mergner, B Kuster - Annual Review of Plant Biology, 2022 - annualreviews.org
Proteins are intimately involved in executing and controlling virtually all cellular processes.
To understand the molecular mechanisms that underlie plant phenotypes, it is essential to …

[HTML][HTML] Systematic analysis of the impact of phosphorylation and O-GlcNAcylation on protein subcellular localization

S Xu, S Suttapitugsakul, M Tong, R Wu - Cell reports, 2023 - cell.com
The subcellular localization of proteins is critical for their functions in eukaryotic cells and is
tightly correlated with protein modifications. Here, we comprehensively investigate the …

Nucleocytoplasmic proteomic analysis uncovers eRF1 and nonsense-mediated decay as modifiers of ALS/FTD C9orf72 toxicity

JA Ortega, EL Daley, S Kour, M Samani, L Tellez… - Neuron, 2020 - cell.com
The most common genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal
dementia (FTD) is a hexanucleotide repeat expansion in C9orf72 (C9-HRE). While RNA and …

Differential photoregulation of the nuclear and cytoplasmic CRY1 in Arabidopsis

S Liu, L Zhang, L Gao, Z Chen, Y Bie, Q Zhao… - New …, 2022 - Wiley Online Library
Summary Arabidopsis cryptochrome 1 (CRY1) is a blue light receptor distributed in the
nucleus and cytoplasm. The nuclear CRY1, but not cytoplasmic CRY1, mediates blue light …

NLR we there yet? Nucleocytoplasmic coordination of NLR‐mediated immunity

D Lüdke, Q Yan, PFW Rohmann, M Wiermer - New Phytologist, 2022 - Wiley Online Library
Plant intracellular nucleotide‐binding leucine‐rich repeat immune receptors (NLRs)
perceive the activity of pathogen‐secreted effector molecules that, when undetected …

Probabilistic variable-length segmentation of protein sequences for discriminative motif discovery (DiMotif) and sequence embedding (ProtVecX)

E Asgari, AC McHardy, MRK Mofrad - Scientific reports, 2019 - nature.com
In this paper, we present peptide-pair encoding (PPE), a general-purpose probabilistic
segmentation of protein sequences into commonly occurring variable-length sub …