[HTML][HTML] Neuronal morphology goes digital: a research hub for cellular and system neuroscience

R Parekh, GA Ascoli - Neuron, 2013 - cell.com
The importance of neuronal morphology in brain function has been recognized for over a
century. The broad applicability of" digital reconstructions" of neuron morphology across …

Modelling the molecular mechanisms of synaptic plasticity using systems biology approaches

JH Kotaleski, KT Blackwell - Nature Reviews Neuroscience, 2010 - nature.com
Synaptic plasticity is thought to underlie learning and memory, but the complexity of the
interactions between the ion channels, enzymes and genes that are involved in synaptic …

PyNN: a common interface for neuronal network simulators

AP Davison, D Brüderle, JM Eppler… - Frontiers in …, 2009 - frontiersin.org
Computational neuroscience has produced a diversity of software for simulations of
networks of spiking neurons, with both negative and positive consequences. On the one …

The Virtual Brain: a simulator of primate brain network dynamics

P Sanz Leon, SA Knock, MM Woodman… - Frontiers in …, 2013 - frontiersin.org
We present The Virtual Brain (TVB), a neuroinformatics platform for full brain network
simulations using biologically realistic connectivity. This simulation environment enables the …

NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail

P Gleeson, S Crook, RC Cannon… - PLoS computational …, 2010 - journals.plos.org
Biologically detailed single neuron and network models are important for understanding
how ion channels, synapses and anatomical connectivity underlie the complex electrical …

NetPyNE, a tool for data-driven multiscale modeling of brain circuits

S Dura-Bernal, BA Suter, P Gleeson, M Cantarelli… - Elife, 2019 - elifesciences.org
Biophysical modeling of neuronal networks helps to integrate and interpret rapidly growing
and disparate experimental datasets at multiple scales. The NetPyNE tool (www. netpyne …

BluePyOpt: leveraging open source software and cloud infrastructure to optimise model parameters in neuroscience

W Van Geit, M Gevaert, G Chindemi… - Frontiers in …, 2016 - frontiersin.org
At many scales in neuroscience, appropriate mathematical models take the form of complex
dynamical systems. Parameterizing such models to conform to the multitude of available …

Multimodal modeling of neural network activity: computing LFP, ECoG, EEG, and MEG signals with LFPy 2.0

E Hagen, S Næss, TV Ness… - Frontiers in …, 2018 - frontiersin.org
Recordings of extracellular electrical, and later also magnetic, brain signals have been the
dominant technique for measuring brain activity for decades. The interpretation of such …

Precise excitation-inhibition balance controls gain and timing in the hippocampus

A Bhatia, S Moza, US Bhalla - Elife, 2019 - elifesciences.org
Excitation-inhibition (EI) balance controls excitability, dynamic range, and input gating in
many brain circuits. Subsets of synaptic input can be selected or'gated'by precise …

Is realistic neuronal modeling realistic?

M Almog, A Korngreen - Journal of neurophysiology, 2016 - journals.physiology.org
Scientific models are abstractions that aim to explain natural phenomena. A successful
model shows how a complex phenomenon arises from relatively simple principles while …