[HTML][HTML] Neuronal morphology goes digital: a research hub for cellular and system neuroscience
R Parekh, GA Ascoli - Neuron, 2013 - cell.com
The importance of neuronal morphology in brain function has been recognized for over a
century. The broad applicability of" digital reconstructions" of neuron morphology across …
century. The broad applicability of" digital reconstructions" of neuron morphology across …
Modelling the molecular mechanisms of synaptic plasticity using systems biology approaches
Synaptic plasticity is thought to underlie learning and memory, but the complexity of the
interactions between the ion channels, enzymes and genes that are involved in synaptic …
interactions between the ion channels, enzymes and genes that are involved in synaptic …
PyNN: a common interface for neuronal network simulators
AP Davison, D Brüderle, JM Eppler… - Frontiers in …, 2009 - frontiersin.org
Computational neuroscience has produced a diversity of software for simulations of
networks of spiking neurons, with both negative and positive consequences. On the one …
networks of spiking neurons, with both negative and positive consequences. On the one …
The Virtual Brain: a simulator of primate brain network dynamics
We present The Virtual Brain (TVB), a neuroinformatics platform for full brain network
simulations using biologically realistic connectivity. This simulation environment enables the …
simulations using biologically realistic connectivity. This simulation environment enables the …
NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail
Biologically detailed single neuron and network models are important for understanding
how ion channels, synapses and anatomical connectivity underlie the complex electrical …
how ion channels, synapses and anatomical connectivity underlie the complex electrical …
NetPyNE, a tool for data-driven multiscale modeling of brain circuits
Biophysical modeling of neuronal networks helps to integrate and interpret rapidly growing
and disparate experimental datasets at multiple scales. The NetPyNE tool (www. netpyne …
and disparate experimental datasets at multiple scales. The NetPyNE tool (www. netpyne …
BluePyOpt: leveraging open source software and cloud infrastructure to optimise model parameters in neuroscience
At many scales in neuroscience, appropriate mathematical models take the form of complex
dynamical systems. Parameterizing such models to conform to the multitude of available …
dynamical systems. Parameterizing such models to conform to the multitude of available …
Multimodal modeling of neural network activity: computing LFP, ECoG, EEG, and MEG signals with LFPy 2.0
Recordings of extracellular electrical, and later also magnetic, brain signals have been the
dominant technique for measuring brain activity for decades. The interpretation of such …
dominant technique for measuring brain activity for decades. The interpretation of such …
Precise excitation-inhibition balance controls gain and timing in the hippocampus
Excitation-inhibition (EI) balance controls excitability, dynamic range, and input gating in
many brain circuits. Subsets of synaptic input can be selected or'gated'by precise …
many brain circuits. Subsets of synaptic input can be selected or'gated'by precise …
Is realistic neuronal modeling realistic?
M Almog, A Korngreen - Journal of neurophysiology, 2016 - journals.physiology.org
Scientific models are abstractions that aim to explain natural phenomena. A successful
model shows how a complex phenomenon arises from relatively simple principles while …
model shows how a complex phenomenon arises from relatively simple principles while …