Population-level mathematical modeling of antimicrobial resistance: a systematic review

AM Niewiadomska, B Jayabalasingham, JC Seidman… - BMC medicine, 2019 - Springer
Background Mathematical transmission models are increasingly used to guide public health
interventions for infectious diseases, particularly in the context of emerging pathogens; …

[HTML][HTML] Challenges for modelling interventions for future pandemics

ME Kretzschmar, B Ashby, E Fearon, CE Overton… - Epidemics, 2022 - Elsevier
Mathematical modelling and statistical inference provide a framework to evaluate different
non-pharmaceutical and pharmaceutical interventions for the control of epidemics that has …

Translating ecology, physiology, biochemistry, and population genetics research to meet the challenge of tick and tick‐borne diseases in North America

MD Esteve‐Gassent, I Castro‐Arellano… - Archives of insect …, 2016 - Wiley Online Library
Emerging and re‐emerging tick‐borne diseases threaten public health and the wellbeing of
domestic animals and wildlife globally. The adoption of an evolutionary ecology framework …

[HTML][HTML] Eight challenges in phylodynamic inference

SDW Frost, OG Pybus, JR Gog, C Viboud, S Bonhoeffer… - Epidemics, 2015 - Elsevier
The field of phylodynamics, which attempts to enhance our understanding of infectious
disease dynamics using pathogen phylogenies, has made great strides in the past decade …

Using agent-based modelling to simulate social-ecological systems across scales

M Lippe, M Bithell, N Gotts, D Natalini… - GeoInformatica, 2019 - Springer
Agent-based modelling (ABM) simulates Social-Ecological-Systems (SESs) based on the
decision-making and actions of individual actors or actor groups, their interactions with each …

The within-host population dynamics of Mycobacterium tuberculosis vary with treatment efficacy

A Trauner, Q Liu, LE Via, X Liu, X Ruan, L Liang, H Shi… - Genome biology, 2017 - Springer
Background Combination therapy is one of the most effective tools for limiting the
emergence of drug resistance in pathogens. Despite the widespread adoption of …

Vaccine escape in a heterogeneous population: insights for SARS-CoV-2 from a simple model

JR Gog, EM Hill, L Danon… - Royal Society Open …, 2021 - royalsocietypublishing.org
As a countermeasure to the SARS-CoV-2 pandemic, there has been swift development and
clinical trial assessment of candidate vaccines, with subsequent deployment as part of mass …

Viral factors in influenza pandemic risk assessment

M Lipsitch, W Barclay, R Raman, CJ Russell, JA Belser… - Elife, 2016 - elifesciences.org
The threat of an influenza A virus pandemic stems from continual virus spillovers from
reservoir species, a tiny fraction of which spark sustained transmission in humans. To date …

Individual and temporal variation in pathogen load predicts long‐term impacts of an emerging infectious disease

K Wells, RK Hamede, ME Jones, PA Hohenlohe… - Ecology, 2019 - Wiley Online Library
Emerging infectious diseases increasingly threaten wildlife populations. Most studies focus
on managing short‐term epidemic properties, such as controlling early outbreaks. Predicting …

A complete categorization of multiscale models of infectious disease systems

W Garira - Journal of biological dynamics, 2017 - Taylor & Francis
Modelling of infectious disease systems has entered a new era in which disease modellers
are increasingly turning to multiscale modelling to extend traditional modelling frameworks …