PredictProtein-predicting protein structure and function for 29 years

M Bernhofer, C Dallago, T Karl… - Nucleic acids …, 2021 - academic.oup.com
Abstract Since 1992 PredictProtein (https://predictprotein. org) is a one-stop online resource
for protein sequence analysis with its main site hosted at the Luxembourg Centre for …

Analysis tool web services from the EMBL-EBI

H McWilliam, W Li, M Uludag, S Squizzato… - Nucleic acids …, 2013 - academic.oup.com
Abstract Since 2004 the European Bioinformatics Institute (EMBL-EBI) has provided access
to a wide range of databases and analysis tools via Web Services interfaces. This comprises …

Big data in drug discovery

N Brown, J Cambruzzi, PJ Cox, M Davies… - Progress in medicinal …, 2018 - Elsevier
Abstract Interpretation of Big Data in the drug discovery community should enhance project
timelines and reduce clinical attrition through improved early decision making. The issues …

Word-sized graphics for scientific texts

F Beck, D Weiskopf - IEEE transactions on visualization and …, 2017 - ieeexplore.ieee.org
Generating visualizations at the size of a word creates dense information representations
often called sparklines. The integration of word-sized graphics into text could avoid …

Git can facilitate greater reproducibility and increased transparency in science

K Ram - Source code for biology and medicine, 2013 - Springer
Background Reproducibility is the hallmark of good science. Maintaining a high degree of
transparency in scientific reporting is essential not just for gaining trust and credibility within …

A call for bioimaging software usability

AE Carpenter, L Kamentsky, KW Eliceiri - Nature methods, 2012 - nature.com
Bioimaging software developed in a research setting often is not widely used by the
scientific community. We suggest that, to maximize both the public's and researchers' …

On the lifetime of bioinformatics web services

F Kern, T Fehlmann, A Keller - Nucleic acids research, 2020 - academic.oup.com
Web services are used through all disciplines in life sciences and the online landscape is
growing by hundreds of novel servers annually. However, availability varies, and …

Open source drug discovery–a limited tutorial

MN Robertson, PM Ylioja, AE Williamson, M Woelfle… - Parasitology, 2014 - cambridge.org
Open science is a new concept for the practice of experimental laboratory-based research,
such as drug discovery. The authors have recently gained experience in how to run such …

The goldmine of GWAS summary statistics: a systematic review of methods and tools

PI Kontou, PG Bagos - BioData Mining, 2024 - Springer
Genome-wide association studies (GWAS) have revolutionized our understanding of the
genetic architecture of complex traits and diseases. GWAS summary statistics have become …

TEES 2.2: biomedical event extraction for diverse corpora

J Björne, T Salakoski - BMC bioinformatics, 2015 - Springer
Abstract Background The Turku Event Extraction System (TEES) is a text mining program
developed for the extraction of events, complex biomedical relationships, from scientific …