The causes of evolvability and their evolution

JL Payne, A Wagner - Nature Reviews Genetics, 2019 - nature.com
Evolvability is the ability of a biological system to produce phenotypic variation that is both
heritable and adaptive. It has long been the subject of anecdotal observations and …

Empirical fitness landscapes and the predictability of evolution

JAGM De Visser, J Krug - Nature Reviews Genetics, 2014 - nature.com
The genotype–fitness map (that is, the fitness landscape) is a key determinant of evolution,
yet it has mostly been used as a superficial metaphor because we know little about its …

Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently

A Currin, N Swainston, PJ Day, DB Kell - Chemical Society Reviews, 2015 - pubs.rsc.org
The amino acid sequence of a protein affects both its structure and its function. Thus, the
ability to modify the sequence, and hence the structure and activity, of individual proteins in …

[書籍][B] The emergence of life: from chemical origins to synthetic biology

PL Luisi - 2016 - books.google.com
Addressing the emergence of life from a systems biology perspective, this new edition has
undergone extensive revision, reflecting changes in scientific understanding and evolution …

Histone H3K36 mutations promote sarcomagenesis through altered histone methylation landscape

C Lu, SU Jain, D Hoelper, D Bechet, RC Molden, L Ran… - Science, 2016 - science.org
Several types of pediatric cancers reportedly contain high-frequency missense mutations in
histone H3, yet the underlying oncogenic mechanism remains poorly characterized. Here …

Adaptation in protein fitness landscapes is facilitated by indirect paths

NC Wu, L Dai, CA Olson, JO Lloyd-Smith, R Sun - Elife, 2016 - elifesciences.org
The structure of fitness landscapes is critical for understanding adaptive protein evolution.
Previous empirical studies on fitness landscapes were confined to either the neighborhood …

Elucidating the molecular architecture of adaptation via evolve and resequence experiments

A Long, G Liti, A Luptak, O Tenaillon - Nature Reviews Genetics, 2015 - nature.com
Evolve and resequence (E&R) experiments use experimental evolution to adapt populations
to a novel environment, then next-generation sequencing to analyse genetic changes. They …

Opinion: Studies on the origin of life—the end of the beginning

JD Sutherland - Nature Reviews Chemistry, 2017 - nature.com
Understanding how life on Earth might have originated is the major goal of origins of life
chemistry. To proceed from simple feedstock molecules and energy sources to a living …

Evolution in the light of fitness landscape theory

I Fragata, A Blanckaert, MAD Louro, DA Liberles… - Trends in ecology & …, 2019 - cell.com
By formalizing the relationship between genotype or phenotype and fitness, fitness
landscapes harbor information on molecular and evolutionary constraints. The shape of the …

FASTAptamer: a bioinformatic toolkit for high-throughput sequence analysis of combinatorial selections

KK Alam, JL Chang, DH Burke - Molecular Therapy-Nucleic Acids, 2015 - cell.com
High-throughput sequence (HTS) analysis of combinatorial selection populations
accelerates lead discovery and optimization and offers dynamic insight into selection …