Spectrochemistry of firefly bioluminescence

MB Al-Handawi, S Polavaram, A Kurlevskaya… - Chemical …, 2022 - ACS Publications
The chemical reactions underlying the emission of light in fireflies and other bioluminescent
beetles are some of the most thoroughly studied processes by scientists worldwide. Despite …

[HTML][HTML] Understanding the complete bioluminescence cycle from a multiscale computational perspective: A review

YJ Liu - Journal of Photochemistry and Photobiology C …, 2022 - Elsevier
Bioluminescence (BL) is an amazing natural phenomenon whose visible light is produced
by living organisms. BL phenomenon is quite pervasive and has been observed in 17 phyla …

PyDFT-QMMM: A modular, extensible software framework for DFT-based QM/MM molecular dynamics

JP Pederson, JG McDaniel - The Journal of Chemical Physics, 2024 - pubs.aip.org
PyDFT-QMMM is a Python-based package for performing hybrid quantum
mechanics/molecular mechanics (QM/MM) simulations at the density functional level of …

Unraveling the contributions to the spectral shape of flexible dyes in solution: Insights on the absorption spectrum of an oxyluciferin analogue

J Cerezo, C García-Iriepa, F Santoro… - Physical Chemistry …, 2023 - pubs.rsc.org
We present a computational investigation of the absorption spectrum in water of 5, 5-
spirocyclopropyl-oxyluciferin (5, 5-CprOxyLH), an analogue of the emitter compound …

Amide–imide tautomerization in the glutamine side chain in enzymatic and photochemical reactions in proteins

BL Grigorenko, MG Khrenova… - Physical Chemistry …, 2018 - pubs.rsc.org
Amide–imide tautomerization presents a pervasive class of chemical transformations in
organic chemistry of natural compounds. In this Perspective, we describe two distinctively …

Enzymatic degradation of phthalate esters in the environment: Advances, challenges and opportunities

S Sun, PO Syrén - Chemical Engineering Journal, 2025 - Elsevier
The continued growth in phthalate esters (PAEs) production (∼ 8 million tons per year) has
led to the increased emissions of PAEs into atmospheric, soil, and aquatic environments …

Luciferin Regeneration in Firefly Bioluminescence via Proton‐Transfer‐Facilitated Hydrolysis, Condensation and Chiral Inversion

YY Cheng, YJ Liu - ChemPhysChem, 2019 - Wiley Online Library
Firefly bioluminescence is produced via luciferin enzymatic reactions in luciferase. Luciferin
has to be unceasingly replenished to maintain bioluminescence. How is the luciferin …

The C-terminal Region of D-DT Regulates Molecular Recognition for Protein–Ligand Complexes

A Parkins, AVR Pilien, AM Wolff… - Journal of Medicinal …, 2024 - ACS Publications
Systematic analysis of molecular recognition is critical for understanding the biological
function of macromolecules. For the immunomodulatory protein D-dopachrome tautomerase …

Effect of protein conformation and AMP protonation state on fireflies' bioluminescent emission

C Garcia-Iriepa, I Navizet - Molecules, 2019 - mdpi.com
The emitted color in fireflies' bioluminescent systems depends on the beetle species the
system is extracted from and on different external factors (pH, temperature…) among others …

[HTML][HTML] Protein Engineering for Industrial Biocatalysis: Principles, Approaches, and Lessons from Engineered PETases

K Grigorakis, C Ferousi, E Topakas - Catalysts, 2025 - mdpi.com
Protein engineering has emerged as a transformative field in industrial biotechnology,
enabling the optimization of enzymes to meet stringent industrial demands for stability …