Fundamental studies of functional nucleic acids: aptamers, riboswitches, ribozymes and DNAzymes

R Micura, C Höbartner - Chemical Society Reviews, 2020 - pubs.rsc.org
This review aims at juxtaposing common versus distinct structural and functional strategies
that are applied by aptamers, riboswitches, and ribozymes/DNAzymes. Focusing on recently …

In vitro selection, characterization, and application of deoxyribozymes that cleave RNA

SK Silverman - Nucleic acids research, 2005 - academic.oup.com
Over the last decade, many catalytically active DNA molecules (deoxyribozymes; DNA
enzymes) have been identified by in vitro selection from random-sequence DNA pools. This …

Crystal structure of an RNA-cleaving DNAzyme

H Liu, X Yu, Y Chen, J Zhang, B Wu, L Zheng… - Nature …, 2017 - nature.com
In addition to storage of genetic information, DNA can also catalyze various reactions. RNA-
cleaving DNAzymes are the catalytic DNAs discovered the earliest, and they can cleave …

[PDF][PDF] A highly selective DNAzyme sensor for mercury cations

M Hollenstein, C Hipolito, DD Curtis Lam, M David - 2008 - Citeseer
Materials: dAimTP was synthesized according to a literature procedure [1] and dUaaTP was
purchased from Sigma-Aldrich. All oligonucleotides were purchased from Integrated DNA …

Biologically inspired synthetic enzymes made from DNA

K Schlosser, Y Li - Chemistry & biology, 2009 - cell.com
In cells, DNA typically consists of two antiparallel strands arranged in a double-helical
structure, which is central to its fundamental role in storing and transmitting genetic …

DNA as a versatile chemical component for catalysis, encoding, and stereocontrol

SK Silverman - Angewandte Chemie International Edition, 2010 - Wiley Online Library
DNA (deoxyribonucleic acid) is the genetic material common to all of Earth's organisms. Our
biological understanding of DNA is extensive and well‐exploited. In recent years, chemists …

Deoxyribozymes: selection design and serendipity in the development of DNA catalysts

SK Silverman - Accounts of chemical research, 2009 - ACS Publications
One of the chemist's key motivations is to explore the forefront of catalysis. In this Account,
we describe our laboratory's efforts at one such forefront: the use of DNA as a catalyst …

Catalytic DNA (deoxyribozymes) for synthetic applications—current abilities and future prospects

SK Silverman - Chemical communications, 2008 - pubs.rsc.org
The discovery of naturally occurring catalytic RNA (RNA enzymes, or ribozymes) in the
1980s immediately revised the view of RNA as a passive messenger that solely carries …

[PDF][PDF] Site-specific N-alkylation of DNA oligonucleotide nucleobases by DNAzyme-catalyzed reductive amination

RD Boyd, MM Kennebeck, AA Miranda… - Nucleic acids …, 2024 - academic.oup.com
DNA and RNA nucleobase modifications are biologically relevant and valuable in
fundamental biochemical and biophysical investigations of nucleic acids. However, directly …

Lives that introns lead after splicing

JR Hesselberth - Wiley Interdisciplinary Reviews: RNA, 2013 - Wiley Online Library
After transcription of a eukaryotic pre‐mRNA, its introns are removed by the spliceosome,
joining exons for translation. The intron products of splicing have long been considered …