Polygenic adaptation: a unifying framework to understand positive selection

N Barghi, J Hermisson, C Schlötterer - Nature Reviews Genetics, 2020 - nature.com
Most adaption processes have a polygenic genetic basis, but even with the recent explosive
growth of genomic data we are still lacking a unified framework describing the dynamics of …

Where are the disease-associated eQTLs?

BD Umans, A Battle, Y Gilad - Trends in Genetics, 2021 - cell.com
Most disease-associated variants, although located in putatively regulatory regions, do not
have detectable effects on gene expression. One explanation could be that we have not …

Comparative transcriptomics reveals human-specific cortical features

NL Jorstad, JHT Song, D Exposito-Alonso, H Suresh… - Science, 2023 - science.org
The cognitive abilities of humans are distinctive among primates, but their molecular and
cellular substrates are poorly understood. We used comparative single-nucleus …

Chromosomal inversion polymorphisms shape the genomic landscape of deer mice

OS Harringmeyer, HE Hoekstra - Nature Ecology & Evolution, 2022 - nature.com
Chromosomal inversions are an important form of structural variation that can affect
recombination, chromosome structure and fitness. However, because inversions can be …

A chromosomal inversion contributes to divergence in multiple traits between deer mouse ecotypes

ER Hager, OS Harringmeyer, TB Wooldridge, S Theingi… - Science, 2022 - science.org
How locally adapted ecotypes are established and maintained within a species is a long-
standing question in evolutionary biology. Using forest and prairie ecotypes of deer mice …

A beginner's guide to low‐coverage whole genome sequencing for population genomics

RN Lou, A Jacobs, AP Wilder… - Molecular …, 2021 - Wiley Online Library
Low‐coverage whole genome sequencing (lcWGS) has emerged as a powerful and cost‐
effective approach for population genomic studies in both model and nonmodel species …

[HTML][HTML] Eco-evolutionary genomics of chromosomal inversionsFree GPT-4 DeepSeek

M Wellenreuther, L Bernatchez - Trends in ecology & evolution, 2018 - cell.com
Chromosomal inversions have long fascinated evolutionary biologists due to their
suppression of recombination, which can protect co-adapted alleles. Emerging research …

Genomic prediction of (mal) adaptation across current and future climatic landscapes

T Capblancq, MC Fitzpatrick, RA Bay… - Annual Review of …, 2020 - annualreviews.org
Signals of local adaptation have been found in many plants and animals, highlighting the
heterogeneity in the distribution of adaptive genetic variation throughout species ranges. In …

The Ensembl gene annotation system

BL Aken, S Ayling, D Barrell, L Clarke, V Curwen… - Database, 2016 - academic.oup.com
The Ensembl gene annotation system has been used to annotate over 70 different
vertebrate species across a wide range of genome projects. Furthermore, it generates the …

Evolution of the ancestral mammalian karyotype and syntenic regions

J Damas, M Corbo, J Kim, J Turner-Maier… - Proceedings of the …, 2022 - pnas.org
Decrypting the rearrangements that drive mammalian chromosome evolution is critical to
understanding the molecular bases of speciation, adaptation, and disease susceptibility …