Rodent systematics in an age of discovery: recent advances and prospects

G D'Elía, PH Fabre, EP Lessa - Journal of Mammalogy, 2019 - academic.oup.com
Abstract With almost 2,600 species, Rodentia is the most diverse order of mammals. Here,
we provide an overview of changes in our understanding of the systematics of living rodents …

BUSCO applications from quality assessments to gene prediction and phylogenomics

RM Waterhouse, M Seppey, FA Simão… - Molecular biology …, 2018 - academic.oup.com
Genomics promises comprehensive surveying of genomes and metagenomes, but rapidly
changing technologies and expanding data volumes make evaluation of completeness a …

The historical biogeography of Mammalia

MS Springer, RW Meredith… - … Transactions of the …, 2011 - royalsocietypublishing.org
Palaeobiogeographic reconstructions are underpinned by phylogenies, divergence times
and ancestral area reconstructions, which together yield ancestral area chronograms that …

A glimpse on the pattern of rodent diversification: a phylogenetic approach

PH Fabre, L Hautier, D Dimitrov, EJ P Douzery - BMC evolutionary biology, 2012 - Springer
Background Development of phylogenetic methods that do not rely on fossils for the study of
evolutionary processes through time have revolutionized the field of evolutionary biology …

[HTML][HTML] Comparative anatomy of the bony labyrinth (inner ear) of placental mammals

EG Ekdale - PloS one, 2013 - journals.plos.org
Background Variation is a naturally occurring phenomenon that is observable at all levels of
morphology, from anatomical variations of DNA molecules to gross variations between …

Molecular and genomic data identify the closest living relative of primates

JE Janecka, W Miller, TH Pringle, F Wiens, A Zitzmann… - Science, 2007 - science.org
A full understanding of primate morphological and genomic evolution requires the
identification of their closest living relative. In order to resolve the ancestral relationships …

Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades

S Blanga-Kanfi, H Miranda, O Penn, T Pupko… - BMC evolutionary …, 2009 - Springer
Background Rodentia is the most diverse order of placental mammals, with extant rodent
species representing about half of all placental diversity. In spite of many morphological and …

Accurate transposable element annotation is vital when analyzing new genome assemblies

RN Platt, L Blanco-Berdugo… - Genome biology and …, 2016 - academic.oup.com
Transposable elements (TEs) are mobile genetic elements with the ability to replicate
themselves throughout the host genome. In some taxa TEs reach copy numbers in hundreds …

Diversification and biogeography of the Neotropical caviomorph lineage Octodontoidea (Rodentia: Hystricognathi)

NS Upham, BD Patterson - Molecular Phylogenetics and Evolution, 2012 - Elsevier
The rodent superfamily Octodontoidea comprises 6 families, 38 genera, and 193 living
species of spiny rats, tuco-tucos, degus, hutias, and their relatives. All are endemic to the …

Developmental mechanisms of stripe patterns in rodents

R Mallarino, C Henegar, M Mirasierra, M Manceau… - Nature, 2016 - nature.com
Mammalian colour patterns are among the most recognizable characteristics found in nature
and can have a profound impact on fitness. However, little is known about the mechanisms …