Life under extreme energy limitation: a synthesis of laboratory-and field-based investigations

MA Lever, KL Rogers, KG Lloyd… - FEMS microbiology …, 2015 - academic.oup.com
The ability of microorganisms to withstand long periods with extremely low energy input has
gained increasing scientific attention in recent years. Starvation experiments in the …

Increasing phytoremediation efficiency and reliability using novel omics approaches

TH Bell, S Joly, FE Pitre, E Yergeau - Trends in biotechnology, 2014 - cell.com
Phytoremediation is a cost-effective green alternative to traditional soil remediation
technologies, but has experienced varied success in practice. The recent omics revolution …

Drivers of bacterial maintenance and minimal energy requirements

CP Kempes, PM van Bodegom, D Wolpert… - Frontiers in …, 2017 - frontiersin.org
Microbes maintain themselves through a variety of processes. Several of these processes
can be reduced or shut down entirely when resource availability declines. In pure culture …

Regulation of mRNA stability during bacterial stress responses

DA Vargas-Blanco, SS Shell - Frontiers in microbiology, 2020 - frontiersin.org
Bacteria have a remarkable ability to sense environmental changes, swiftly regulating their
transcriptional and posttranscriptional machinery as a response. Under conditions that …

The stability of an mRNA is influenced by its concentration: a potential physical mechanism to regulate gene expression

S Nouaille, S Mondeil, AL Finoux, C Moulis… - Nucleic acids …, 2017 - academic.oup.com
Changing mRNA stability is a major post-transcriptional way of controlling gene expression,
particularly in newly encountered conditions. As the concentration of mRNA is the result of …

Regulation of glycolytic flux and overflow metabolism depending on the source of energy generation for energy demand

K Shimizu, Y Matsuoka - Biotechnology Advances, 2019 - Elsevier
Overflow metabolism is a common phenomenon observed at higher glycolytic flux in many
bacteria, yeast (known as Crabtree effect), and mammalian cells including cancer cells …

Efficient genetic approaches for improvement of plasmid based expression of recombinant protein in Escherichia coli: A review

TK Singha, P Gulati, A Mohanty, YP Khasa… - Process …, 2017 - Elsevier
During the past two decades, there has been an explosion of new knowledge and
techniques in the field of recombinant protein expression. However, over-expression of …

[HTML][HTML] The social fabric of the RNA degradosome

KJ Bandyra, M Bouvier, AJ Carpousis… - Biochimica et Biophysica …, 2013 - Elsevier
Bacterial transcripts each have a characteristic half-life, suggesting that the processes of
RNA degradation work in an active and selective manner. Moreover, the processes are well …

Large-effect beneficial synonymous mutations mediate rapid and parallel adaptation in a bacterium

D Agashe, M Sane, K Phalnikar… - Molecular Biology …, 2016 - academic.oup.com
Contrary to previous understanding, recent evidence indicates that synonymous codon
changes may sometimes face strong selection. However, it remains difficult to generalize the …

Dual role of transcription and transcript stability in the regulation of gene expression in Escherichia coli cells cultured on glucose at different growth rates

T Esquerre, S Laguerre, C Turlan… - Nucleic acids …, 2014 - academic.oup.com
Microorganisms extensively reorganize gene expression to adjust growth rate to changes in
growth conditions. At the genomic scale, we measured the contribution of both transcription …