Determinants of enhancer and promoter activities of regulatory elements

R Andersson, A Sandelin - Nature Reviews Genetics, 2020 - nature.com
The proper activities of enhancers and gene promoters are essential for coordinated
transcription within a cell. Although diverse methodologies have been developed to identify …

The relationship between genome structure and function

AM Oudelaar, DR Higgs - Nature Reviews Genetics, 2021 - nature.com
Precise patterns of gene expression in metazoans are controlled by three classes of
regulatory elements: promoters, enhancers and boundary elements. During differentiation …

Inferring gene expression from cell-free DNA fragmentation profiles

MS Esfahani, EG Hamilton, M Mehrmohamadi… - Nature …, 2022 - nature.com
Profiling of circulating tumor DNA (ctDNA) in the bloodstream shows promise for
noninvasive cancer detection. Chromatin fragmentation features have previously been …

Position-dependent function of human sequence-specific transcription factors

SH Duttke, C Guzman, M Chang, NP Delos Santos… - Nature, 2024 - nature.com
Patterns of transcriptional activity are encoded in our genome through regulatory elements
such as promoters or enhancers that, paradoxically, contain similar assortments of …

[HTML][HTML] Molecular complexes at euchromatin, heterochromatin and centromeric chromatin

O Morrison, J Thakur - International Journal of Molecular Sciences, 2021 - mdpi.com
Chromatin consists of a complex of DNA and histone proteins as its core components and
plays an important role in both packaging DNA and regulating DNA metabolic pathways …

IL-7: comprehensive review

H Winer, GOL Rodrigues, JA Hixon, FB Aiello, TC Hsu… - Cytokine, 2022 - Elsevier
Overview IL-7 is a member of the family of cytokines with four anti-parallel α helixes that bind
Type I cytokine receptors. It is produced by stromal cells and is required for development …

Sequence basis of transcription initiation in the human genome

K Dudnyk, D Cai, C Shi, J Xu, J Zhou - Science, 2024 - science.org
Transcription initiation is a process that is essential to ensuring the proper function of any
gene, yet we still lack a unified understanding of sequence patterns and rules that explain …

Regulatory activity is the default DNA state in eukaryotes

I Luthra, C Jensen, XE Chen, AL Salaudeen… - Nature Structural & …, 2024 - nature.com
Genomes encode for genes and non-coding DNA, both capable of transcriptional activity.
However, unlike canonical genes, many transcripts from non-coding DNA have limited …

[HTML][HTML] hERG K+ channels: structure, function, and clinical significance

JI Vandenberg, MD Perry, MJ Perrin… - Physiological …, 2012 - journals.physiology.org
The human ether-a-go-go related gene (hERG) encodes the pore-forming subunit of the
rapid component of the delayed rectifier K+ channel, Kv11. 1, which are expressed in the …

Synthetic promoter designs enabled by a comprehensive analysis of plant core promoters

T Jores, J Tonnies, T Wrightsman, ES Buckler… - Nature Plants, 2021 - nature.com
Targeted engineering of plant gene expression holds great promise for ensuring food
security and for producing biopharmaceuticals in plants. However, this engineering requires …