Lessons in de novo peptide sequencing by tandem mass spectrometry

KF Medzihradszky, RJ Chalkley - Mass spectrometry reviews, 2015 - Wiley Online Library
Mass spectrometry has become the method of choice for the qualitative and quantitative
characterization of protein mixtures isolated from all kinds of living organisms. The raw data …

Peptide radicals and cation radicals in the gas phase

F Turecek, RR Julian - Chemical reviews, 2013 - ACS Publications
For about three decades, the chemistry of cation radicals derived from organic molecules
had received a major impetus from mass spectrometry. This was because cation radicals …

Analysis of mammalian O-glycopeptides—we have made a good start, but there is a long way to go

Z Darula, KF Medzihradszky - Molecular & Cellular Proteomics, 2018 - ASBMB
Glycosylation is perhaps the most common post-translational modification. Recently there
has been growing interest in cataloging the glycan structures, glycoproteins, and specific …

Mechanisms for S–S and N–Cα bond cleavage in peptide ECD and ETD mass spectrometry

J Simons - Chemical Physics Letters, 2010 - Elsevier
This Letter reviews efforts made to elucidate the mechanism by which electron-capture and
electron-transfer dissociation bond cleavages occur in mass spectrometry. The primary …

Affinity enrichment and characterization of mucin core-1 type glycopeptides from bovine serum

Z Darula, KF Medzihradszky - Molecular & Cellular Proteomics, 2009 - ASBMB
The lack of consensus sequence, common core structure, and universal endoglycosidase
for the release of O-linked oligosaccharides makes O-glycosylation more difficult to tackle …

Where does the electron go? Electron distribution and reactivity of peptide cation radicals formed by electron transfer in the gas phase

X Chen, C Hao - Journal of the American Chemical Society, 2008 - ACS Publications
We report the first detailed analysis at correlated levels of ab initio theory of experimentally
studied peptide cations undergoing charge reduction by collisional electron transfer and …

Effects of cation charge-site identity and position on electron-transfer dissociation of polypeptide cations

Y **a, HP Gunawardena, DE Erickson… - Journal of the …, 2007 - ACS Publications
The effect of cation charge site on gas-phase ion/ion reactions between multiply protonated
model peptides and singly charged anions has been examined. Insights are drawn from the …

Electron attachment step in electron capture dissociation (ECD) and electron transfer dissociation (ETD)

I Anusiewicz, J Berdys-Kochanska… - The Journal of Physical …, 2005 - ACS Publications
We have made use of classical dynamics trajectory simultions and ab initio electronic
structure calculations to estimate the cross sections with which electrons are attached (in …

Dissociation techniques in mass spectrometry-based proteomics

AW Jones, HJ Cooper - Analyst, 2011 - pubs.rsc.org
The field of proteomics, the large-scale analysis of proteins, has undergone a huge
expansion over the past decade. Mass spectrometry-based proteomics relies on the …

Probing the mechanism of electron capture and electron transfer dissociation using tags with variable electron affinity

CH Sohn, CK Chung, S Yin… - Journal of the …, 2009 - ACS Publications
Electron capture dissociation (ECD) and electron transfer dissociation (ETD) of doubly
protonated electron affinity (EA)-tuned peptides were studied to further illuminate the …