Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections

C Wählby, IM Sintorn, F Erlandsson… - Journal of …, 2004 - Wiley Online Library
We present a region‐based segmentation method in which seeds representing both object
and background pixels are created by combining morphological filtering of both the original …

A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks

G Lin, U Adiga, K Olson, JF Guzowski… - Cytometry Part A: the …, 2003 - Wiley Online Library
Background Automated segmentation of fluorescently‐labeled cell nuclei in 3D confocal
microscope images is essential to many studies involving morphological and functional …

Virtual cell imaging: A review on simulation methods employed in image cytometry

V Ulman, D Svoboda, M Nykter, M Kozubek… - Cytometry Part …, 2016 - Wiley Online Library
The simulations of cells and microscope images thereof have been used to facilitate the
development, selection, and validation of image analysis algorithms employed in cytometry …

Some trends in microscope image processing

N Bonnet - Micron, 2004 - Elsevier
The present review tries to identify some trends among the multitude of ways followed by
image processing developments in the field of microscopy. Nine topics were selected. They …

Computational framework for simulating fluorescence microscope images with cell populations

A Lehmussola, P Ruusuvuori… - IEEE transactions on …, 2007 - ieeexplore.ieee.org
Fluorescence microscopy combined with digital imaging constructs a basic platform for
numerous biomedical studies in the field of cellular imaging. As the studies relying on …

Generation of digital phantoms of cell nuclei and simulation of image formation in 3D image cytometry

D Svoboda, M Kozubek… - … Part A: The Journal of the …, 2009 - Wiley Online Library
Image cytometry still faces the problem of the quality of cell image analysis results.
Degradations caused by cell preparation, optics, and electronics considerably affect most …

Segmentation of confocal microscope images of cell nuclei in thick tissue sections

C Ortiz de Solorzano, E Garcia Rodriguez… - Journal of …, 1999 - Wiley Online Library
Segmentation of intact cell nuclei from three‐dimensional (3D) images of thick tissue
sections is an important basic capability necessary for many biological research studies …

Segmentation of nuclei and cells using membrane related protein markers

C Ortiz de Solorzano, R Malladi… - journal of …, 2001 - Wiley Online Library
Segmenting individual cell nuclei from microscope images normally involves volume
labelling of the nuclei with a DNA stain. However, this method often fails when the nuclei are …

Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening

V Ljosa, AE Carpenter - PLoS computational biology, 2009 - journals.plos.org
Modern automated microscopes collect digital images at an astonishing pace. Automated
image analysis can measure biological phenotypes quantitatively and reliably, and has …

[PDF][PDF] Robust cell image segmentation methods

E Bengtsson, C Wahlby, J Lindblad - … and Image Analysis c/c of …, 2004 - academia.edu
Biomedical cell image analysis is one of the main application fields of computerized image
analysis. This paper outlines the field and the different analysis steps related to it. Relative …