[HTML][HTML] The tetratricopeptide-repeat motif is a versatile platform that enables diverse modes of molecular recognition

A Perez-Riba, LS Itzhaki - Current opinion in structural biology, 2019‏ - Elsevier
Highlights•The most common interaction is a short, negatively-charged peptide binding
across a groove formed by two to three TPRs.•Longer peptides bind in an extended …

Expansion and function of repeat domain proteins during stress and development in plants

M Sharma, GK Pandey - Frontiers in plant science, 2016‏ - frontiersin.org
The recurrent repeats having conserved stretches of amino acids exists across all domains
of life. Subsequent repetition of single sequence motif and the number and length of the …

Exploring the repeat protein universe through computational protein design

TJ Brunette, F Parmeggiani, PS Huang, G Bhabha… - Nature, 2015‏ - nature.com
A central question in protein evolution is the extent to which naturally occurring proteins
sample the space of folded structures accessible to the polypeptide chain. Repeat proteins …

Functional and topological diversity of LOV domain photoreceptors

ST Glantz, EJ Carpenter, M Melkonian… - Proceedings of the …, 2016‏ - pnas.org
Light–oxygen–voltage sensitive (LOV) flavoproteins are ubiquitous photoreceptors that
mediate responses to environmental cues. Photosensory inputs are transduced into …

MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins

E Potenza, TD Domenico, I Walsh… - Nucleic acids …, 2015‏ - academic.oup.com
Abstract MobiDB (http://mobidb. bio. unipd. it/) is a database of intrinsically disordered and
mobile proteins. Intrinsically disordered regions are key for the function of numerous …

RepeatsDB in 2025: expanding annotations of structured tandem repeats proteins on AlphaFoldDB

D Clementel, PN Arrías, S Mozaffari… - Nucleic Acids …, 2025‏ - academic.oup.com
Abstract RepeatsDB (URL: https://repeatsdb. org) stands as a key resource for the
classification and annotation of Structured Tandem Repeat Proteins (STRPs), incorporating …

The 2013 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection

XM Fernandez-Suarez, MY Galperin - Nucleic acids research, 2012‏ - academic.oup.com
Abstract The 20th annual Database Issue of Nucleic Acids Research includes 176 articles,
half of which describe new online molecular biology databases and the other half provide …

[HTML][HTML] A new census of protein tandem repeats and their relationship with intrinsic disorder

M Delucchi, E Schaper, O Sachenkova, A Elofsson… - Genes, 2020‏ - mdpi.com
Protein tandem repeats (TRs) are often associated with immunity-related functions and
diseases. Since that last census of protein TRs in 1999, the number of curated proteins …

RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures

L Paladin, M Bevilacqua, S Errigo… - Nucleic Acids …, 2021‏ - academic.oup.com
The RepeatsDB database (URL: https://repeatsdb. org/) provides annotations and
classification for protein tandem repeat structures from the Protein Data Bank (PDB). Protein …

STRPsearch: fast detection of structured tandem repeat proteins

S Mozaffari, PN Arrías, D Clementel, D Piovesan… - …, 2024‏ - academic.oup.com
Abstract Motivation Structured Tandem Repeats Proteins (STRPs) constitute a subclass of
tandem repeats characterized by repetitive structural motifs. These proteins exhibit distinct …