Machine learning methods for small data challenges in molecular science

B Dou, Z Zhu, E Merkurjev, L Ke, L Chen… - Chemical …, 2023 - ACS Publications
Small data are often used in scientific and engineering research due to the presence of
various constraints, such as time, cost, ethics, privacy, security, and technical limitations in …

Graph neural networks for materials science and chemistry

P Reiser, M Neubert, A Eberhard, L Torresi… - Communications …, 2022 - nature.com
Abstract Machine learning plays an increasingly important role in many areas of chemistry
and materials science, being used to predict materials properties, accelerate simulations …

A comprehensive survey on deep graph representation learning

W Ju, Z Fang, Y Gu, Z Liu, Q Long, Z Qiao, Y Qin… - Neural Networks, 2024 - Elsevier
Graph representation learning aims to effectively encode high-dimensional sparse graph-
structured data into low-dimensional dense vectors, which is a fundamental task that has …

Gemnet: Universal directional graph neural networks for molecules

J Gasteiger, F Becker… - Advances in Neural …, 2021 - proceedings.neurips.cc
Effectively predicting molecular interactions has the potential to accelerate molecular
dynamics by multiple orders of magnitude and thus revolutionize chemical simulations …

Physics-inspired structural representations for molecules and materials

F Musil, A Grisafi, AP Bartók, C Ortner… - Chemical …, 2021 - ACS Publications
The first step in the construction of a regression model or a data-driven analysis, aiming to
predict or elucidate the relationship between the atomic-scale structure of matter and its …

Equiformer: Equivariant graph attention transformer for 3d atomistic graphs

YL Liao, T Smidt - arxiv preprint arxiv:2206.11990, 2022 - arxiv.org
Despite their widespread success in various domains, Transformer networks have yet to
perform well across datasets in the domain of 3D atomistic graphs such as molecules even …

Atomistic line graph neural network for improved materials property predictions

K Choudhary, B DeCost - npj Computational Materials, 2021 - nature.com
Graph neural networks (GNN) have been shown to provide substantial performance
improvements for atomistic material representation and modeling compared with descriptor …

Provably efficient machine learning for quantum many-body problems

HY Huang, R Kueng, G Torlai, VV Albert, J Preskill - Science, 2022 - science.org
Classical machine learning (ML) provides a potentially powerful approach to solving
challenging quantum many-body problems in physics and chemistry. However, the …

Nested graph neural networks

M Zhang, P Li - Advances in Neural Information Processing …, 2021 - proceedings.neurips.cc
Graph neural network (GNN)'s success in graph classification is closely related to the
Weisfeiler-Lehman (1-WL) algorithm. By iteratively aggregating neighboring node features …

Fast and uncertainty-aware directional message passing for non-equilibrium molecules

J Gasteiger, S Giri, JT Margraf… - arxiv preprint arxiv …, 2020 - arxiv.org
Many important tasks in chemistry revolve around molecules during reactions. This requires
predictions far from the equilibrium, while most recent work in machine learning for …