Intertwining roles of R-loops and G-quadruplexes in DNA repair, transcription and genome organization

P Wulfridge, K Sarma - Nature Cell Biology, 2024 - nature.com
R-loops are three-stranded nucleic acid structures that are abundant and widespread across
the genome and that have important physiological roles in many nuclear processes. Their …

The DNA damage response and inflammation in cancer

V Klapp, B Álvarez-Abril, G Leuzzi, G Kroemer, A Ciccia… - Cancer discovery, 2023 - AACR
Genomic stability in normal cells is crucial to avoid oncogenesis. Accordingly, multiple
components of the DNA damage response (DDR) operate as bona fide tumor suppressor …

PARP1 associates with R-loops to promote their resolution and genome stability

N Laspata, P Kaur, SY Mersaoui, D Muoio… - Nucleic acids …, 2023 - academic.oup.com
PARP1 is a DNA-dependent ADP-Ribose transferase with ADP-ribosylation activity that is
triggered by DNA breaks and non-B DNA structures to mediate their resolution. PARP1 was …

DDX41 is required for cGAS-STING activation against DNA virus infection

RS Singh, V Vidhyasagar, S Yang, AB Arna, M Yadav… - Cell reports, 2022 - cell.com
Upon binding double-stranded DNA (dsDNA), cyclic GMP-AMP synthase (cGAS) is activated
and initiates the cGAS-stimulator of IFN genes (STING)-type I interferon pathway. DEAD-box …

G-quadruplexes associated with R-loops promote CTCF binding

P Wulfridge, Q Yan, N Rell, J Doherty, S Jacobson… - Molecular Cell, 2023 - cell.com
CTCF is a critical regulator of genome architecture and gene expression that binds
thousands of sites on chromatin. CTCF genomic localization is controlled by the recognition …

Transcription–replication conflicts as a source of genome instability

L Goehring, TT Huang, DJ Smith - Annual review of genetics, 2023 - annualreviews.org
Transcription and replication both require large macromolecular complexes to act on a DNA
template, yet these machineries cannot simultaneously act on the same DNA sequence …

RNA biogenesis and RNA metabolism factors as R-loop suppressors: a hidden role in genome integrity

R Luna, B Gómez-González… - Genes & …, 2024 - genesdev.cshlp.org
Genome integrity relies on the accuracy of DNA metabolism, but as appreciated for more
than four decades, transcription enhances mutation and recombination frequencies. More …

The chromatin-associated RNAs in gene regulation and cancer

J Tang, X Wang, D **ao, S Liu, Y Tao - Molecular Cancer, 2023 - Springer
Eukaryotic genomes are prevalently transcribed into many types of RNAs that translate into
proteins or execute gene regulatory functions. Many RNAs associate with chromatin directly …

DEAD-box RNA helicases and genome stability

M Cargill, R Venkataraman, S Lee - Genes, 2021 - mdpi.com
DEAD-box RNA helicases are important regulators of RNA metabolism and have been
implicated in the development of cancer. Interestingly, these helicases constitute a major …

DDX18 prevents R-loop-induced DNA damage and genome instability via PARP-1

WL Lin, JK Chen, X Wen, W He, GA Zarceno, Y Chen… - Cell reports, 2022 - cell.com
R loops occur frequently in genomes and contribute to fundamental biological processes at
multiple levels. Consequently, understanding the molecular and cellular biology of R loops …