Harnessing genomics to fast-track genetic improvement in aquaculture

RD Houston, TP Bean, DJ Macqueen… - Nature Reviews …, 2020 - nature.com
Aquaculture is the fastest-growing farmed food sector and will soon become the primary
source of fish and shellfish for human diets. In contrast to crop and livestock production …

The evolutionary significance of polyploidy

Y Van de Peer, E Mizrachi, K Marchal - Nature Reviews Genetics, 2017 - nature.com
Polyploidy, or the duplication of entire genomes, has been observed in prokaryotic and
eukaryotic organisms, and in somatic and germ cells. The consequences of polyploidization …

[HTML][HTML] Deeply conserved synteny resolves early events in vertebrate evolution

O Simakov, F Marlétaz, JX Yue, B O'Connell… - Nature ecology & …, 2020 - nature.com
Although it is widely believed that early vertebrate evolution was shaped by ancient whole-
genome duplications, the number, timing and mechanism of these events remain elusive …

Maintenance of fish health in aquaculture: review of epidemiological approaches for prevention and control of infectious disease of fish

A Assefa, F Abunna - Veterinary medicine international, 2018 - Wiley Online Library
Aquaculture is rapidly growing part of agriculture worldwide. It makes up around 44 percent
of total fish production globally. This increased growth of production is achieved despite …

Genome‐wide association and genomic selection in aquaculture

JM Yanez, A Barria, ME Lopez, T Moen… - Reviews in …, 2023 - Wiley Online Library
Recent advancements in genomic technologies have led to the discovery and application of
DNA‐markers [eg single nucleotide polymorphisms (SNPs)] for the genetic improvement of …

Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

Recent demographic history inferred by high-resolution analysis of linkage disequilibrium

E Santiago, I Novo, AF Pardiñas… - Molecular Biology …, 2020 - academic.oup.com
Inferring changes in effective population size (N e) in the recent past is of special interest for
conservation of endangered species and for human history research. Current methods for …

A comparison of the innate and adaptive immune systems in cartilaginous fish, ray-finned fish, and lobe-finned fish

NC Smith, ML Rise, SL Christian - Frontiers in immunology, 2019 - frontiersin.org
The immune system is composed of two subsystems—the innate immune system and the
adaptive immune system. The innate immune system is the first to respond to pathogens and …

Deriving genotypes from RAD-seq short-read data using Stacks

NC Rochette, JM Catchen - Nature protocols, 2017 - nature.com
Restriction site-associated DNA sequencing (RAD-seq) allows for the genome-wide
discovery and genoty** of single-nucleotide polymorphisms in hundreds of individuals at …

Harnessing genomic information for livestock improvement

M Georges, C Charlier, B Hayes - Nature Reviews Genetics, 2019 - nature.com
The world demand for animal-based food products is anticipated to increase by 70% by
2050. Meeting this demand in a way that has a minimal impact on the environment will …