A perspective on the prospective use of AI in protein structure prediction

R Versini, S Sritharan, B Aykac Fas… - Journal of Chemical …, 2023‏ - ACS Publications
AlphaFold2 (AF2) and RoseTTaFold (RF) have revolutionized structural biology, serving as
highly reliable and effective methods for predicting protein structures. This article explores …

Applicability of AlphaFold2 in the modeling of dimeric, trimeric, and tetrameric coiled‐coil domains

R Madaj, M Martinez‐Goikoetxea, K Kaminski… - Protein …, 2025‏ - Wiley Online Library
Coiled coils are a common protein structural motif involved in cellular functions ranging from
mediating protein–protein interactions to facilitating processes such as signal transduction …

Atomic insights into the signaling landscape of E. coli PhoQ histidine kinase from molecular dynamics simulations

S Lazaridi, J Yuan, T Lemmin - Scientific reports, 2024‏ - nature.com
Bacteria rely on two-component systems to sense environmental cues and regulate gene
expression for adaptation. The PhoQ/PhoP system exemplifies this crucial role, playing a …

CCfrag: Scanning folding potential of coiled-coil fragments with AlphaFold

M Martinez-Goikoetxea - Bioinformatics Advances, 2024‏ - academic.oup.com
Motivation Coiled coils are a widespread structural motif consisting of multiple α-helices that
wind around a central axis to bury their hydrophobic core. While AlphaFold has emerged as …

[PDF][PDF] Applicability of AlphaFold2 in the modelling of coiled-coil domains

R Madaja, M Martinez-Goikoetxeab, K Kaminskia…‏ - scholar.archive.org
Coiled coils are a common protein structural motif involved in cellular functions ranging from
mediating protein-protein interactions to facilitating processes such as signal transduction or …