Recent advances of deep learning for computational histopathology: principles and applications

Y Wu, M Cheng, S Huang, Z Pei, Y Zuo, J Liu, K Yang… - Cancers, 2022 - mdpi.com
Simple Summary The histopathological image is widely considered as the gold standard for
the diagnosis and prognosis of human cancers. Recently, deep learning technology has …

Nucleus segmentation: towards automated solutions

R Hollandi, N Moshkov, L Paavolainen, E Tasnadi… - Trends in Cell …, 2022 - cell.com
Single nucleus segmentation is a frequent challenge of microscopy image processing, since
it is the first step of many quantitative data analysis pipelines. The quality of tracking single …

Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning

NF Greenwald, G Miller, E Moen, A Kong, A Kagel… - Nature …, 2022 - nature.com
A principal challenge in the analysis of tissue imaging data is cell segmentation—the task of
identifying the precise boundary of every cell in an image. To address this problem we …

Simcvd: Simple contrastive voxel-wise representation distillation for semi-supervised medical image segmentation

C You, Y Zhou, R Zhao, L Staib… - IEEE Transactions on …, 2022 - ieeexplore.ieee.org
Automated segmentation in medical image analysis is a challenging task that requires a
large amount of manually labeled data. However, most existing learning-based approaches …

Class-aware adversarial transformers for medical image segmentation

C You, R Zhao, F Liu, S Dong… - Advances in …, 2022 - proceedings.neurips.cc
Transformers have made remarkable progress towards modeling long-range dependencies
within the medical image analysis domain. However, current transformer-based models …

Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma

OS Chapman, J Luebeck, S Sridhar, ITL Wong, D Dixit… - Nature …, 2023 - nature.com
Circular extrachromosomal DNA (ecDNA) in patient tumors is an important driver of
oncogenic gene expression, evolution of drug resistance and poor patient outcomes …

Bootstrap** semi-supervised medical image segmentation with anatomical-aware contrastive distillation

C You, W Dai, Y Min, L Staib, JS Duncan - International conference on …, 2023 - Springer
Contrastive learning has shown great promise over annotation scarcity problems in the
context of medical image segmentation. Existing approaches typically assume a balanced …

Evolutionary design of explainable algorithms for biomedical image segmentation

K Cortacero, B McKenzie, S Müller, R Khazen… - Nature …, 2023 - nature.com
An unresolved issue in contemporary biomedicine is the overwhelming number and
diversity of complex images that require annotation, analysis and interpretation. Recent …

Evaluation of deep learning architectures for complex immunofluorescence nuclear image segmentation

F Kromp, L Fischer, E Bozsaky… - … on Medical Imaging, 2021 - ieeexplore.ieee.org
Separating and labeling each nuclear instance (instance-aware segmentation) is the key
challenge in nuclear image segmentation. Deep Convolutional Neural Networks have been …

Incremental learning meets transfer learning: Application to multi-site prostate mri segmentation

C You, J **ang, K Su, X Zhang, S Dong… - … Workshop on Distributed …, 2022 - Springer
Many medical datasets have recently been created for medical image segmentation tasks,
and it is natural to question whether we can use them to sequentially train a single model …