Integrated genomic selection for accelerating breeding programs of climate-smart cereals

D Sinha, AK Maurya, G Abdi, M Majeed, R Agarwal… - Genes, 2023 - mdpi.com
Rapidly rising population and climate changes are two critical issues that require immediate
action to achieve sustainable development goals. The rising population is posing increased …

Unravelling inversions: Technological advances, challenges, and potential impact on crop breeding

H Hu, A Scheben, J Wang, F Li, C Li… - Plant biotechnology …, 2024 - Wiley Online Library
Inversions, a type of chromosomal structural variation, significantly influence plant
adaptation and gene functions by impacting gene expression and recombination rates …

[HTML][HTML] Pear genomes display significant genetic diversity and provide novel insights into the fruit quality traits differentiation

B Ding, H Hu, Y Cao, R Xu, Y Lin, Y Song, G He… - Horticultural plant …, 2024 - Elsevier
The pear (Pyrus spp.) is well known for diverse flavors, textures, and global horticultural
importance. However, the genetic diversity responsible for its extensive phenotypic …

Application of machine learning and genomics for orphan crop improvement

TR MacNish, MF Danilevicz, PE Bayer… - Nature …, 2025 - nature.com
Orphan crops are important sources of nutrition in develo** regions and many are tolerant
to biotic and abiotic stressors; however, modern crop improvement technologies have not …

A barley pan-transcriptome reveals layers of genotype-dependent transcriptional complexity

W Guo, M Schreiber, VB Marosi, P Bagnaresi… - Nature Genetics, 2025 - nature.com
A pan-transcriptome describes the transcriptional and post-transcriptional consequences of
genome diversity from multiple individuals within a species. We developed a barley pan …

Exploring pan-genomes: an overview of resources and tools for unraveling structure, function, and evolution of crop genes and genomes

S Naithani, CH Deng, SK Sahu, P Jaiswal - Biomolecules, 2023 - mdpi.com
The availability of multiple sequenced genomes from a single species made it possible to
explore intra-and inter-specific genomic comparisons at higher resolution and build clade …

Genome-wide association study provided insights into the polled phenotype and polled intersex syndrome (PIS) in goats

F Zhang, Q Liu, P Gong, Y Wang, C Shi, L Zhu, J Zhao… - BMC genomics, 2024 - Springer
Background Breeding polled goats is a welfare-friendly approach for horn removal in
comparison to invasive methods. To gain a comprehensive understanding of the genetic …

What Are We Learning from Plant Pangenomes?

M Jayakodi, H Shim, M Mascher - Annual Review of Plant …, 2024 - annualreviews.org
A single reference genome does not fully capture species diversity. By contrast, a
pangenome incorporates multiple genomes to capture the entire set of nonredundant genes …

Genomic and cell-specific regulation of benzylisoquinoline alkaloid biosynthesis in opium poppy

UVT Hong, M Tamiru-Oli, B Hurgobin… - Journal of …, 2025 - academic.oup.com
Opium poppy is a crop of great commercial value as a source of several opium alkaloids for
the pharmaceutical industries including morphine, codeine, thebaine, noscapine, and …

Regulatory networks of coresident subgenomes during rapid fiber cell elongation in upland cotton

L Yang, W Qin, X Wei, R Liu, J Yang, Z Wang… - Plant …, 2024 - cell.com
Cotton, an intriguing plant species shaped by polyploidization, evolution, and domestication,
holds particular interest due to the complex mechanisms governing fiber traits across its two …