Extreme genome reduction in symbiotic bacteria

JP McCutcheon, NA Moran - Nature Reviews Microbiology, 2012 - nature.com
Since 2006, numerous cases of bacterial symbionts with extraordinarily small genomes
have been reported. These organisms represent independent lineages from diverse …

Fitness costs of plasmids: a limit to plasmid transmission

A San Millan, RC MacLean - Microbiology spectrum, 2017 - Am Soc Microbiol
Plasmids mediate the horizontal transmission of genetic information between bacteria,
facilitating their adaptation to multiple environmental conditions. An especially important …

Genome-Based Taxonomic Classification of the Phylum Actinobacteria

I Nouioui, L Carro, M García-López… - Frontiers in …, 2018 - frontiersin.org
The application of phylogenetic taxonomic procedures led to improvements in the
classification of bacteria assigned to the phylum Actinobacteria but even so there remains a …

Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria

A Hördt, MG López, JP Meier-Kolthoff… - Frontiers in …, 2020 - frontiersin.org
The class Alphaproteobacteria is comprised of a diverse assemblage of Gram-negative
bacteria that includes organisms of varying morphologies, physiologies and habitat …

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

J Ren, NA Ahlgren, YY Lu, JA Fuhrman, F Sun - Microbiome, 2017 - Springer
Background Identifying viral sequences in mixed metagenomes containing both viral and
host contigs is a critical first step in analyzing the viral component of samples. Current tools …

Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes

M García-López, JP Meier-Kolthoff, BJ Tindall… - Frontiers in …, 2019 - frontiersin.org
Although considerable progress has been made in recent years regarding the classification
of bacteria assigned to the phylum Bacteroidetes, there remains a need to further clarify …

Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human

HD Song, CC Tu, GW Zhang… - Proceedings of the …, 2005 - National Acad Sciences
The genomic sequences of severe acute respiratory syndrome coronaviruses from human
and palm civet of the 2003/2004 outbreak in the city of Guangzhou, China, were nearly …

Worse than the disease? Reviewing some possible unintended consequences of the mRNA vaccines against COVID-19

S Seneff, G Nigh - International Journal of Vaccine Theory, Practice, and …, 2021 - ijvtpr.com
Operation Warp Speed brought to market in the United States two mRNA vaccines,
produced by Pfizer and Moderna. Interim data suggested high efficacy for both of these …

Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy

M Shintani, ZK Sanchez, K Kimbara - Frontiers in microbiology, 2015 - frontiersin.org
Plasmids are important “vehicles” for the communication of genetic information between
bacteria. The exchange of plasmids transmits pathogenically and environmentally relevant …

DNA-guided DNA interference by a prokaryotic Argonaute

DC Swarts, MM Jore, ER Westra, Y Zhu, JH Janssen… - Nature, 2014 - nature.com
RNA interference is widely distributed in eukaryotes and has a variety of functions, including
antiviral defence and gene regulation,. All RNA interference pathways use small single …