Molecular modeling investigations of sorption and diffusion of small molecules in Glassy polymers

N Vergadou, DN Theodorou - Membranes, 2019 - mdpi.com
With a wide range of applications, from energy and environmental engineering, such as in
gas separations and water purification, to biomedical engineering and packaging, glassy …

Modeling and simulations of polymers: a roadmap

TE Gartner III, A Jayaraman - Macromolecules, 2019 - ACS Publications
Molecular modeling and simulations are invaluable tools for the polymer science and
engineering community. These computational approaches enable predictions and provide …

Coarse-grained simulations of macromolecules: from DNA to nanocomposites

JJ de Pablo - Annual review of physical chemistry, 2011 - annualreviews.org
This review discusses multiscale modeling and simulations of macromolecules and
macromolecular systems in the context of two specific examples. In the first, recent attempts …

On the inner workings of Monte Carlo codes

D Dubbeldam, A Torres-Knoop, KS Walton - Molecular Simulation, 2013 - Taylor & Francis
We review state-of-the-art Monte Carlo (MC) techniques for computing fluid coexistence
properties (Gibbs simulations) and adsorption simulations in nanoporous materials such as …

An optimized molecular potential for carbon dioxide

Z Zhang, Z Duan - The Journal of chemical physics, 2005 - pubs.aip.org
An optimized molecular potential model for carbon dioxide is presented in this paper.
Utilizing the established techniques of molecular-dynamics and histogram reweighting …

Simulation of DNA extension in nanochannels

Y Wang, DR Tree, KD Dorfman - Macromolecules, 2011 - ACS Publications
We have used a realistic model for double-stranded DNA and Monte Carlo simulations to
compute the extension (mean span) of a DNA molecule confined in a nanochannel over the …

Nanochannel confinement: DNA stretch approaching full contour length

Y Kim, KS Kim, KL Kounovsky, R Chang, GY Jung… - Lab on a Chip, 2011 - pubs.rsc.org
Fully stretched DNA molecules are becoming a fundamental component of new systems for
comprehensive genome analysis. Among a number of approaches for elongating DNA …

Molecular simulation of the pore size distribution effect on phase behavior of methane confined in nanopores

B **, R Bi, H Nasrabadi - Fluid Phase Equilibria, 2017 - Elsevier
An understanding of the phase behavior of hydrocarbons is important in the petroleum
reservoir simulation. However, fluid phase behavior in a shale reservoir is substantially …

Phase behavior of multi-component hydrocarbon systems in nano-pores using gauge-GCMC molecular simulation

B **, H Nasrabadi - Fluid Phase Equilibria, 2016 - Elsevier
In recent years, the phase behavior of hydrocarbons in shale reservoirs has received
significant attention. One of the main complexities in modeling the phase behavior in shale …

Progress and outlook in Monte Carlo simulations

DN Theodorou - Industrial & engineering chemistry research, 2010 - ACS Publications
In 1953, Metropolis et al. 1 introduced an ingenious stochastic method for sampling points in
a multidimensional space, according to a prescribed probability distribution defined on that …