Current progress and open challenges for applying deep learning across the biosciences

N Sapoval, A Aghazadeh, MG Nute… - Nature …, 2022‏ - nature.com
Deep Learning (DL) has recently enabled unprecedented advances in one of the grand
challenges in computational biology: the half-century-old problem of protein structure …

[HTML][HTML] Oncogenic collagen I homotrimers from cancer cells bind to α3β1 integrin and impact tumor microbiome and immunity to promote pancreatic cancer

Y Chen, S Yang, J Tavormina, D Tampe, M Zeisberg… - Cancer cell, 2022‏ - cell.com
In contrast to normal type I collagen (Col1) heterotrimer (α1/α2/α1) produced by fibroblasts,
pancreatic cancer cells specifically produce unique Col1 homotrimer (α1/α1/α1). Col1 …

Modular cytokine receptor-targeting chimeras for targeted degradation of cell surface and extracellular proteins

K Pance, JA Gramespacher, JR Byrnes… - Nature …, 2023‏ - nature.com
Targeted degradation of cell surface and extracellular proteins via lysosomal delivery is an
important means to modulate extracellular biology. However, these approaches have …

Next-generation cancer organoids

BL LeSavage, RA Suhar, N Broguiere, MP Lutolf… - Nature materials, 2022‏ - nature.com
Organotypic models of patient-specific tumours are revolutionizing our understanding of
cancer heterogeneity and its implications for personalized medicine. These advancements …

Understanding and overcoming resistance to PARP inhibitors in cancer therapy

MP Dias, SC Moser, S Ganesan… - Nature reviews Clinical …, 2021‏ - nature.com
Develo** novel targeted anticancer therapies is a major goal of current research. The use
of poly (ADP-ribose) polymerase (PARP) inhibitors in patients with homologous …

Artificial intelligence in cancer research and precision medicine

B Bhinder, C Gilvary, NS Madhukar… - Cancer discovery, 2021‏ - aacrjournals.org
Artificial intelligence (AI) is rapidly resha** cancer research and personalized clinical
care. Availability of high-dimensionality datasets coupled with advances in high …

Oncogene-like addiction to aneuploidy in human cancers

V Girish, AA Lakhani, SL Thompson, CM Scaduto… - Science, 2023‏ - science.org
Most cancers exhibit aneuploidy, but its functional significance in tumor development is
controversial. Here, we describe ReDACT (Restoring Disomy in Aneuploid cells using …