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Information-theoretic foundations of DNA data storage
Due to its longevity and enormous information density, DNA is an attractive medium for
archival data storage. Natural DNA more than 700.000 years old has been recovered, and …
archival data storage. Natural DNA more than 700.000 years old has been recovered, and …
Survey for a Decade of Coding for DNA Storage
Advancements in DNA synthesis and sequencing technologies have enabled the storage of
data on synthetic DNA strands. However, realizing its potential relies on the design of …
data on synthetic DNA strands. However, realizing its potential relies on the design of …
Storing Images in DNA via base128 Encoding
Current DNA storage schemes lack flexibility and consistency in processing highly
redundant and correlated image data, resulting in low sequence stability and image …
redundant and correlated image data, resulting in low sequence stability and image …
[HTML][HTML] Weakly mutually uncorrelated codes with maximum run length constraint for DNA storage
X Lu, S Kim - Computers in Biology and Medicine, 2023 - Elsevier
DNA storage systems have begun to attract considerable attention as next-generation
storage technologies due to their high densities and longevity. However, efficient primer …
storage technologies due to their high densities and longevity. However, efficient primer …
Anchor-based correction of substitutions in indexed sets
Motivated by DNA-based data storage, we investigate a system where digital information is
stored in an unordered set of several vectors over a finite alphabet. Each vector begins with …
stored in an unordered set of several vectors over a finite alphabet. Each vector begins with …
On the design of codes for DNA computing: Secondary structure avoidance codes
In this work, we investigate a challenging problem, which has been considered to be an
important criterion in designing codewords for DNA computing purposes, namely secondary …
important criterion in designing codewords for DNA computing purposes, namely secondary …
[HTML][HTML] On secondary structure avoidance of codes for DNA storage
R Zhang, H Wu - Computational and Structural Biotechnology Journal, 2024 - Elsevier
A secondary structure in single-stranded DNA refers to its propensity to undergo self-folding,
leading to functional inactivity and irreparable failures within DNA storage systems …
leading to functional inactivity and irreparable failures within DNA storage systems …
Constructions and Bounds for q-Ary (1, k)-Overlap-Free Codes
Q Cai, X Wang, T Feng - IEEE Transactions on Information …, 2023 - ieeexplore.ieee.org
A-overlap-free code, motivated by applications in DNA-based data storage systems and
synchronization between communication devices, is a set of words in which no prefix of …
synchronization between communication devices, is a set of words in which no prefix of …
Clustering-correcting codes
A new family of codes, called clustering-correcting codes, is presented in this paper. This
family of codes is motivated by the special structure of the data that is stored in DNA-based …
family of codes is motivated by the special structure of the data that is stored in DNA-based …
Improved constructions of secondary structure avoidance codes for DNA sequences
H Chu, C Wang, Y Zhang - 2023 12th international symposium …, 2023 - ieeexplore.ieee.org
In a DNA sequence, we have the celebrated Watson-Crick complement T=A,A=T,C=G, and
G=C. The phenomenon of secondary structure refers to the tendency of a single stranded …
G=C. The phenomenon of secondary structure refers to the tendency of a single stranded …