Current status of structural variation studies in plants

Y Yuan, PE Bayer, J Batley… - Plant Biotechnology …, 2021 - Wiley Online Library
Structural variations (SVs) including gene presence/absence variations and copy number
variations are a common feature of genomes in plants and, together with single nucleotide …

Roles of abscisic acid in regulating ripening and quality of strawberry, a model non-climacteric fruit

BJ Li, D Grierson, Y Shi, KS Chen - Horticulture Research, 2022 - academic.oup.com
Abscisic acid (ABA) is a dominant regulator of ripening and quality in non-climacteric fruits.
Strawberry is regarded as a model non-climacteric fruit due to its extensive genetic studies …

The Chicken Pan-Genome Reveals Gene Content Variation and a Promoter Region Deletion in IGF2BP1 Affecting Body Size

K Wang, H Hu, Y Tian, J Li, A Scheben… - Molecular biology …, 2021 - academic.oup.com
Domestication and breeding have reshaped the genomic architecture of chicken, but the
retention and loss of genomic elements during these evolutionary processes remain …

[HTML][HTML] Integrating multi-omics data for crop improvement

F Scossa, S Alseekh, AR Fernie - Journal of plant physiology, 2021 - Elsevier
Our agricultural systems are now in urgent need to secure food for a growing world
population. To meet this challenge, we need a better characterization of plant genetic and …

Two adjacent NAC transcription factors regulate fruit maturity date and flavor in peach

RX Zhang, Y Liu, X Zhang, X Chen, J Sun… - New …, 2024 - Wiley Online Library
Although maturity date (MD) is an essential factor affecting fresh fruit marketing and has a
pleiotropic effect on fruit taste qualities, the underlying mechanisms remain largely unclear …

How the pan-genome is changing crop genomics and improvement

R Della Coletta, Y Qiu, S Ou, MB Hufford, CN Hirsch - Genome biology, 2021 - Springer
Crop genomics has seen dramatic advances in recent years due to improvements in
sequencing technology, assembly methods, and computational resources. These advances …

A chromosome‐level genome assembly of radish (Raphanus sativus L.) reveals insights into genome adaptation and differential bolting regulation

L Xu, Y Wang, J Dong, W Zhang, M Tang… - Plant Biotechnology …, 2023 - Wiley Online Library
High‐quality radish (Raphanus sativus) genome represents a valuable resource for
agronomical trait improvements and understanding genome evolution among Brassicaceae …

Multilevel regulation of anthocyanin-promoting R2R3-MYB transcription factors in plants

J Yang, Y Chen, Z **ao, H Shen, Y Li… - Frontiers in Plant …, 2022 - frontiersin.org
Anthocyanins are common secondary metabolites in plants that confer red, blue, and purple
colorations in plants and are highly desired by consumers for their visual appearance and …

Genome structure variation analyses of peach reveal population dynamics and a 1.67 Mb causal inversion for fruit shape

J Guan, Y Xu, Y Yu, J Fu, F Ren, J Guo, J Zhao, Q Jiang… - Genome Biology, 2021 - Springer
Abstract Background Structural variations (SVs), a major resource of genomic variation, can
have profound consequences on phenotypic variation, yet the impacts of SVs remain largely …

Marker-assisted selection in breeding for fruit trait improvement: A review

G De Mori, G Cipriani - International Journal of Molecular Sciences, 2023 - mdpi.com
Breeding fruit species is time-consuming and expensive. With few exceptions, trees are
likely the worst species to work with in terms of genetics and breeding. Most are …